ENCFF316MTC

Library Details

Organism: Homo Sapiens
Biosample: trophoblast cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR083HYC
Description: Part of ENCODE experiment ENCSR083HYC.
Author: Joe Ecker, Salk

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 2134.00 5.21 13.70 100.0 SNHG5-273 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 36.47 0.09 0.23 18.9 SNHG5-273 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 1.00 0.00 0.01 100.0 SNHG5-273 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 258.00 0.63 1.66 100.0 SNHG5-273 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 200.91 0.49 1.29 84.77 SNHG5-273 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 7.00 0.02 0.04 50.0 SNHG5-273 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 132.00 0.32 0.85 100.0 SNHG5-273 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 30336.00 74.04 194.75 100.0 SNHG5-273 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 15.00 0.04 0.10 100.0 SNHG5-273 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 1.00 0.90 0.01 100.0 MEG8-251 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 3.00 0.23 0.02 75.0 SNHG14-336 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 4.00 0.30 0.03 80.0 SNHG14-336 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 2.00 0.05 0.01 100.0 SNHG14-341 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 6940.00 70.45 44.55 100.0 FMN2-209 protein coding CDS not defined trophoblast cell (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 1.00 0.00 0.01 100.0 LINC02739-203 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 479.00 1.18 3.08 28.06 LINC02739-203 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 8989.00 22.18 57.71 100.0 LINC02739-203 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 1009.00 2.49 6.48 100.0 LINC02739-203 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 6790.00 16.76 43.59 100.0 LINC02739-203 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 1228.00 3.03 7.88 71.94 LINC02739-203 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 49.00 63.64 0.31 100.0 MIR124-1HG-216 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 207.00 22.48 1.33 100.0 SNHG10-212 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 149.50 3.07 0.96 96.45 SNHG19-202 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 3.93 0.08 0.03 5.31 SNHG19-202 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 141223.00 67.30 906.61 100.0 MIR222HG-206 lncRNA trophoblast cell (In vitro differentiated cells)