ENCFF316MTC

Library Details

Organism: Homo Sapiens
Biosample: trophoblast cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR083HYC
Description: Part of ENCODE experiment ENCSR083HYC.
Author: Joe Ecker, Salk

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 44.00 1.73 0.28 100.0 RPS8-206 protein coding CDS not defined trophoblast cell (In vitro differentiated cells)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 27.00 1.24 0.17 100.0 RPL13-207 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 1380.00 63.36 8.86 100.0 RPL13-207 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 18.00 0.04 0.12 17.65 EIF4A2-219 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 3590.00 7.76 23.05 54.77 EIF4A2-219 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 6554.00 14.17 42.07 90.89 EIF4A2-219 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 932.00 2.02 5.98 95.49 EIF4A2-219 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 286.00 0.62 1.84 22.15 EIF4A2-219 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 340.00 0.74 2.18 94.97 EIF4A2-219 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 6282.00 13.58 40.33 81.64 EIF4A2-219 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 3452.00 7.46 22.16 74.33 EIF4A2-219 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 2.00 0.00 0.01 100.0 EIF4A2-219 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 7794.00 16.85 50.04 98.03 EIF4A2-219 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 11.00 0.02 0.07 100.0 EIF4A2-219 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 3252.00 7.03 20.88 68.81 EIF4A2-219 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 3227.00 6.98 20.72 100.0 EIF4A2-219 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 85.00 0.18 0.55 100.0 EIF4A2-219 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 37.00 6.47 0.24 100.0 RPS8-207 protein coding CDS not defined trophoblast cell (In vitro differentiated cells)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 2135.00 48.88 13.71 100.0 RPL7A-206 protein coding CDS not defined trophoblast cell (In vitro differentiated cells)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 1059.00 24.24 6.80 100.0 RPL7A-206 protein coding CDS not defined trophoblast cell (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 1066.00 10.96 6.84 98.43 RPL21-209 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 2006.00 20.63 12.88 100.0 RPL21-209 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 2032.00 20.89 13.04 100.0 RPL21-209 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 312.00 3.21 2.00 100.0 RPL21-209 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 266.00 2.73 1.71 98.88 RPL21-209 retained intron trophoblast cell (In vitro differentiated cells)