ENCFF316MTC

Library Details

Organism: Homo Sapiens
Biosample: trophoblast cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR083HYC
Description: Part of ENCODE experiment ENCSR083HYC.
Author: Joe Ecker, Salk

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 1.00 0.01 0.01 100.0 SNORD62B-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 14721.00 79.47 94.50 91.87 SNORD62B-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 1147.00 6.19 7.36 100.0 SNORD62B-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 9317.00 97.69 59.81 100.0 MRPL32-203 nonsense mediated decay trophoblast cell (In vitro differentiated cells)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 1856.00 98.46 11.92 100.0 ENST00000436739 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 162.00 17.57 1.04 100.0 TMEM107-204 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 1.00 0.11 0.01 33.33 TMEM107-204 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 14.00 1.52 0.09 42.42 TMEM107-204 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 6.00 1.21 0.04 85.71 SNHG16-201 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 7.00 1.41 0.04 100.0 SNHG16-201 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 241.00 22.48 1.55 97.97 SNORD105B-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 9.00 2.58 0.06 100.0 SNORD121B-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 22.00 8.33 0.14 100.0 SNORD127-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 11.00 4.17 0.07 100.0 SNORD127-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 268.00 31.20 1.72 100.0 SNORD42B-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 2689.00 46.27 17.26 100.0 RNY4P25-201 misc RNA trophoblast cell (In vitro differentiated cells)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 2.00 1.30 0.01 100.0 SNORD121A-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 10.00 0.64 0.06 71.43 SNORD126-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 11.00 0.70 0.07 68.75 SNORD126-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 11.00 4.01 0.07 100.0 SNORD124-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 8.00 0.32 0.05 100.0 RPL3-212 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 103469.00 98.01 664.24 100.0 SMC1A-204 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 105.00 1.95 0.67 100.0 RABGGTB-208 protein coding CDS not defined trophoblast cell (In vitro differentiated cells)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 104.00 8.38 0.67 100.0 DDX39B-219 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 553.00 44.56 3.55 100.0 DDX39B-219 retained intron trophoblast cell (In vitro differentiated cells)