ENCFF316MTC

Library Details

Organism: Homo Sapiens
Biosample: trophoblast cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR083HYC
Description: Part of ENCODE experiment ENCSR083HYC.
Author: Joe Ecker, Salk

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 2473.00 46.54 15.88 100.0 GABRE-209 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 28.00 0.22 0.18 90.32 RPL13A-212 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 811.00 6.40 5.21 100.0 RPL13A-212 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 2.00 0.02 0.01 100.0 RPL13A-212 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 3.00 0.02 0.02 100.0 RPL13A-212 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 154.00 1.22 0.99 98.09 RPL13A-212 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 16.00 0.13 0.10 100.0 RPL13A-212 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 32.00 0.50 0.21 84.21 RPL7A-207 protein coding CDS not defined trophoblast cell (In vitro differentiated cells)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 2229.00 35.05 14.31 100.0 RPL7A-207 protein coding CDS not defined trophoblast cell (In vitro differentiated cells)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 105.00 1.65 0.67 100.0 RPL7A-207 protein coding CDS not defined trophoblast cell (In vitro differentiated cells)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 18.00 0.93 0.12 100.0 NOP56-217 protein coding CDS not defined trophoblast cell (In vitro differentiated cells)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 988.00 51.11 6.34 99.6 NOP56-217 protein coding CDS not defined trophoblast cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 198.00 1.67 1.27 92.09 RABGGTB-213 protein coding CDS not defined trophoblast cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 142.00 1.20 0.91 97.26 RABGGTB-213 protein coding CDS not defined trophoblast cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 36.00 0.30 0.23 100.0 RABGGTB-213 protein coding CDS not defined trophoblast cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 1.00 0.01 0.01 33.33 RABGGTB-213 protein coding CDS not defined trophoblast cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 17.00 0.14 0.11 7.91 RABGGTB-213 protein coding CDS not defined trophoblast cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 3551.00 29.98 22.80 100.0 RABGGTB-213 protein coding CDS not defined trophoblast cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 648.00 5.47 4.16 100.0 RABGGTB-213 protein coding CDS not defined trophoblast cell (In vitro differentiated cells)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 139.00 2.33 0.89 100.0 GNL3-211 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 2815.00 47.25 18.07 100.0 GNL3-211 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 2332.00 79.29 14.97 100.0 RPL5-205 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 410.00 4.14 2.63 100.0 ZBED9-AS1-201 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 224.00 26.29 1.44 100.0 RPS3A-206 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 1395.00 39.81 8.96 100.0 COX7C-203 protein coding trophoblast cell (In vitro differentiated cells)