ENCFF310THB

Library Details

Organism: Homo Sapiens
Biosample: vagina (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR812JEU
Description: Part of ENCODE experiment ENCSR812JEU. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's vagina tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR1-149692805 tRNA-transcript-chr1-149692805_4_33_+ 4–33 2460.00 35.01 10.17 57.61 TRNA-TRANSCRIPT-CHR1-149692805 Pseudo tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR1-149712552 tRNA-transcript-chr1-149712552_1_39_+ 1–39 46.00 0.00 0.19 100.0 TRNA-TRANSCRIPT-CHR1-149712552 Val tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR1-159141611 tRNA-transcript-chr1-159141611_3_20_+ 3–20 69.00 65.71 0.29 100.0 TRNA-TRANSCRIPT-CHR1-159141611 Arg tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_4_34_+ 4–34 39388.00 41.67 162.88 86.68 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_32_53_+ 32–53 6.00 0.01 0.02 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_40_71_+ 40–71 341.00 0.36 1.41 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR1-161448951 tRNA-transcript-chr1-161448951_1_26_+ 1–26 170.00 10.93 0.70 100.0 TRNA-TRANSCRIPT-CHR1-161448951 Leu tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_21_49_+ 21–49 22.00 0.00 0.09 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_1_53_+ 1–53 10.00 0.00 0.04 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_14_49_+ 14–49 492.00 0.07 2.03 78.22 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_21_34_+ 21–34 23.00 0.00 0.10 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_16_42_+ 16–42 156.00 0.02 0.65 92.31 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_4_33_+ 4–33 104030.00 14.21 430.20 41.41 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR1-161480566 tRNA-transcript-chr1-161480566_1_32_+ 1–32 1092.00 81.74 4.52 100.0 TRNA-TRANSCRIPT-CHR1-161480566 Gly tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR1-16545939 tRNA-transcript-chr1-16545939_1_52_+ 1–52 112.00 0.01 0.46 100.0 TRNA-TRANSCRIPT-CHR1-16545939 Gly tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR1-16678271 tRNA-transcript-chr1-16678271_1_32_+ 1–32 2584.00 55.28 10.69 100.0 TRNA-TRANSCRIPT-CHR1-16678271 Gly tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR1-16678271 tRNA-transcript-chr1-16678271_14_32_+ 14–32 573.00 12.26 2.37 100.0 TRNA-TRANSCRIPT-CHR1-16678271 Gly tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR1-16727285 tRNA-transcript-chr1-16727285_2_32_+ 2–32 1983.00 40.21 8.20 100.0 TRNA-TRANSCRIPT-CHR1-16727285 Gly tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR1-167715488 tRNA-transcript-chr1-167715488_8_31_+ 8–31 2.00 0.01 0.01 100.0 TRNA-TRANSCRIPT-CHR1-167715488 Pro tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR1-16861921 tRNA-transcript-chr1-16861921_18_53_+ 18–53 113.00 0.01 0.47 100.0 TRNA-TRANSCRIPT-CHR1-16861921 Gly tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR1-16861921 tRNA-transcript-chr1-16861921_1_35_+ 1–35 1245.00 0.08 5.15 15.16 TRNA-TRANSCRIPT-CHR1-16861921 Gly tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR11-76235825 tRNA-transcript-chr11-76235825_1_32_+ 1–32 11609.00 44.62 48.01 63.15 TRNA-TRANSCRIPT-CHR11-76235825 Pro tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR11-76235825 tRNA-transcript-chr11-76235825_3_32_+ 3–32 10560.00 40.59 43.67 47.63 TRNA-TRANSCRIPT-CHR11-76235825 Pro tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR12-124939966 tRNA-transcript-chr12-124939966_1_53_+ 1–53 8.00 0.79 0.03 100.0 TRNA-TRANSCRIPT-CHR12-124939966 Ala tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR1-248874248 tRNA-transcript-chr1-248874248_1_39_+ 1–39 1235.00 0.17 5.11 100.0 TRNA-TRANSCRIPT-CHR1-248874248 Glu tRNA vagina (Tissue)