ENCFF310THB

Library Details

Organism: Homo Sapiens
Biosample: vagina (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR812JEU
Description: Part of ENCODE experiment ENCSR812JEU. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's vagina tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000823801.1 ENST00000823801.1_153_169_+ 153–169 887.21 29.85 3.67 79.07 ENST00000823801 lncRNA vagina (Tissue)
ENST00000827714.1 ENST00000827714.1_110_129_+ 110–129 1320.00 58.15 5.46 69.0 ENST00000827714 lncRNA vagina (Tissue)
ENST00000827714.1 ENST00000827714.1_110_131_+ 110–131 593.00 26.12 2.45 31.0 ENST00000827714 lncRNA vagina (Tissue)
ENST00000828033.1 ENST00000828033.1_252_322_+ 252–322 221.00 2.22 0.91 100.0 GAS5-377 lncRNA vagina (Tissue)
ENST00000828033.1 ENST00000828033.1_278_318_+ 278–318 1.00 0.01 0.00 100.0 GAS5-377 lncRNA vagina (Tissue)
ENST00000828033.1 ENST00000828033.1_290_318_+ 290–318 1116.00 11.21 4.62 100.0 GAS5-377 lncRNA vagina (Tissue)
ENST00000828033.1 ENST00000828033.1_252_318_+ 252–318 8265.00 83.05 34.18 100.0 GAS5-377 lncRNA vagina (Tissue)
ENST00000830954.1 ENST00000830954.1_968_989_+ 968–989 2103.00 88.44 8.70 100.0 MIR205HG-245 lncRNA vagina (Tissue)
ENST00000836993.1 ENST00000836993.1_387_463_+ 387–463 5.00 0.16 0.02 100.0 ZFAS1-238 lncRNA vagina (Tissue)
ENST00000836993.1 ENST00000836993.1_422_463_+ 422–463 57.00 1.79 0.24 100.0 ZFAS1-238 lncRNA vagina (Tissue)
ENST00000836993.1 ENST00000836993.1_402_463_+ 402–463 55.00 1.72 0.23 100.0 ZFAS1-238 lncRNA vagina (Tissue)
ENST00000836993.1 ENST00000836993.1_410_463_+ 410–463 1330.00 41.67 5.50 100.0 ZFAS1-238 lncRNA vagina (Tissue)
ENST00000836997.1 ENST00000836997.1_305_352_+ 305–352 8892.00 93.26 36.77 100.0 ZFAS1-242 lncRNA vagina (Tissue)
ENST00000836997.1 ENST00000836997.1_305_380_+ 305–380 3.00 0.03 0.01 100.0 ZFAS1-242 lncRNA vagina (Tissue)
ENST00000837997.1 ENST00000837997.1_211_224_+ 211–224 296.00 36.82 1.22 100.0 ENST00000837997 lncRNA vagina (Tissue)
ENST00000837997.1 ENST00000837997.1_214_225_+ 214–225 136.00 16.92 0.56 100.0 ENST00000837997 lncRNA vagina (Tissue)
ENST00000839036.1 ENST00000839036.1_40_61_+ 40–61 4765.00 75.65 19.70 82.97 ENST00000839036 lncRNA vagina (Tissue)
ENST00000849527.1 ENST00000849527.1_293_307_+ 293–307 70.00 13.92 0.29 100.0 ENST00000849527 lncRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_3_32_+ 3–32 151274.00 92.93 625.57 95.73 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_2_52_+ 2–52 19.00 0.01 0.08 100.0 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR1-121020729 tRNA-transcript-chr1-121020729_1_54_+ 1–54 53.00 0.00 0.22 100.0 TRNA-TRANSCRIPT-CHR1-121020729 Val tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_23_+ 1–23 486.00 20.22 2.01 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_33_+ 1–33 1660.00 69.08 6.86 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR1-146037061 tRNA-transcript-chr1-146037061_1_53_+ 1–53 31.00 3.47 0.13 100.0 TRNA-TRANSCRIPT-CHR1-146037061 Gly tRNA vagina (Tissue)
TRNA-TRANSCRIPT-CHR1-148032790 tRNA-transcript-chr1-148032790_1_53_+ 1–53 58.00 5.11 0.24 100.0 TRNA-TRANSCRIPT-CHR1-148032790 Gln tRNA vagina (Tissue)