ENCFF310THB

Library Details

Organism: Homo Sapiens
Biosample: vagina (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR812JEU
Description: Part of ENCODE experiment ENCSR812JEU. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's vagina tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 59789.00 5.67 247.25 99.83 SNHG1-248 lncRNA vagina (Tissue)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 909.00 0.09 3.76 100.0 SNHG1-248 lncRNA vagina (Tissue)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 57.00 0.01 0.24 100.0 SNHG1-248 lncRNA vagina (Tissue)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 822.00 0.08 3.40 100.0 SNHG1-248 lncRNA vagina (Tissue)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 686.00 0.07 2.84 100.0 SNHG1-248 lncRNA vagina (Tissue)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 406.00 0.04 1.68 100.0 SNHG1-248 lncRNA vagina (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 10952.00 1.04 45.29 100.0 SNHG1-248 lncRNA vagina (Tissue)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 156.00 0.01 0.65 100.0 SNHG1-248 lncRNA vagina (Tissue)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 1035.00 0.10 4.28 100.0 SNHG1-248 lncRNA vagina (Tissue)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 60070.00 5.70 248.41 84.46 SNHG1-248 lncRNA vagina (Tissue)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 4624.00 0.44 19.12 88.92 SNHG1-248 lncRNA vagina (Tissue)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 18.00 0.00 0.07 100.0 SNHG1-248 lncRNA vagina (Tissue)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 8.00 0.00 0.03 100.0 SNHG1-248 lncRNA vagina (Tissue)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 22062.00 2.09 91.23 100.0 SNHG1-248 lncRNA vagina (Tissue)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 2035.00 0.19 8.42 74.0 SNHG1-248 lncRNA vagina (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 1050.19 0.10 4.34 36.23 SNHG1-248 lncRNA vagina (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 611.00 0.06 2.53 100.0 SNHG1-248 lncRNA vagina (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 2060.00 0.20 8.52 59.88 SNHG1-248 lncRNA vagina (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 884.00 0.08 3.66 100.0 SNHG1-248 lncRNA vagina (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 210.00 0.02 0.87 100.0 SNHG1-248 lncRNA vagina (Tissue)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 3.00 0.00 0.01 100.0 SNHG1-248 lncRNA vagina (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 3351.00 16.39 13.86 100.0 SNHG5-273 lncRNA vagina (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 127.65 0.62 0.53 89.27 SNHG5-273 lncRNA vagina (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 174.00 0.85 0.72 100.0 SNHG5-273 lncRNA vagina (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 404.00 1.98 1.67 100.0 SNHG5-273 lncRNA vagina (Tissue)