ENCFF310THB

Library Details

Organism: Homo Sapiens
Biosample: vagina (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR812JEU
Description: Part of ENCODE experiment ENCSR812JEU. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's vagina tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 8.49 0.04 0.04 5.94 SNHG5-273 lncRNA vagina (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 7006.00 34.26 28.97 100.0 SNHG5-273 lncRNA vagina (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 189.00 0.92 0.78 100.0 SNHG5-273 lncRNA vagina (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 1979.00 9.68 8.18 100.0 SNHG5-273 lncRNA vagina (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 427.00 2.09 1.77 100.0 SNHG5-273 lncRNA vagina (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 1389.00 0.60 5.74 56.17 MEG8-251 lncRNA vagina (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 210502.00 91.59 870.50 99.27 MEG8-251 lncRNA vagina (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 1207.00 0.53 4.99 47.52 MEG8-251 lncRNA vagina (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 10624.00 4.62 43.93 89.72 MEG8-251 lncRNA vagina (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 9.00 0.00 0.04 100.0 MEG8-251 lncRNA vagina (Tissue)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 3.00 0.32 0.01 100.0 SNHG14-336 lncRNA vagina (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 122.00 30.65 0.50 100.0 FMN2-209 protein coding CDS not defined vagina (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 10.00 0.17 0.04 100.0 LINC02739-203 lncRNA vagina (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 17.00 0.30 0.07 23.29 LINC02739-203 lncRNA vagina (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 43.00 0.75 0.18 100.0 LINC02739-203 lncRNA vagina (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 3316.00 57.93 13.71 100.0 LINC02739-203 lncRNA vagina (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 11.00 0.19 0.05 100.0 LINC02739-203 lncRNA vagina (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 56.00 0.98 0.23 76.71 LINC02739-203 lncRNA vagina (Tissue)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 3.00 75.00 0.01 100.0 MIR124-1HG-216 lncRNA vagina (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 242.00 18.98 1.00 100.0 SNHG10-212 lncRNA vagina (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 5033.00 69.34 20.81 100.0 MIR222HG-206 lncRNA vagina (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 1368.00 18.85 5.66 80.95 MIR222HG-206 lncRNA vagina (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 28.00 0.39 0.12 100.0 MIR222HG-206 lncRNA vagina (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 1004.00 70.56 4.15 100.0 RPSA-216 retained intron vagina (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 1098.00 1.57 4.54 58.47 MIR99AHG-370 lncRNA vagina (Tissue)