ENCFF310THB

Library Details

Organism: Homo Sapiens
Biosample: vagina (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR812JEU
Description: Part of ENCODE experiment ENCSR812JEU. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's vagina tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000658801.2 ENST00000658801.2_178_214_+ 178–214 1724.00 46.34 7.13 97.84 LIMD1-AS1-204 lncRNA vagina (Tissue)
ENST00000659483.3 ENST00000659483.3_1071_1093_+ 1071–1093 13573.00 58.72 56.13 85.36 MIR99AHG-262 lncRNA vagina (Tissue)
ENST00000659483.3 ENST00000659483.3_1110_1131_+ 1110–1131 4956.00 21.44 20.49 100.0 MIR99AHG-262 lncRNA vagina (Tissue)
ENST00000661688.1 ENST00000661688.1_928_950_+ 928–950 88.00 62.86 0.36 92.63 MIR9-2HG-225 lncRNA vagina (Tissue)
ENST00000661815.1 ENST00000661815.1_36_69_+ 36–69 1306.00 43.48 5.40 100.0 MEG8-233 lncRNA vagina (Tissue)
ENST00000661815.1 ENST00000661815.1_2_70_+ 2–70 514.00 17.11 2.13 100.0 MEG8-233 lncRNA vagina (Tissue)
ENST00000662228.1 ENST00000662228.1_1206_1269_+ 1206–1269 2383.00 49.67 9.85 100.0 MEG8-234 lncRNA vagina (Tissue)
ENST00000662228.1 ENST00000662228.1_1205_1272_+ 1205–1272 693.00 14.44 2.87 100.0 MEG8-234 lncRNA vagina (Tissue)
ENST00000665787.1 ENST00000665787.1_2059_2127_+ 2059–2127 214.00 55.87 0.88 100.0 MEG8-240 lncRNA vagina (Tissue)
ENST00000666663.1 ENST00000666663.1_35_81_+ 35–81 2.00 28.57 0.01 100.0 SNHG14-306 lncRNA vagina (Tissue)
ENST00000666735.2 ENST00000666735.2_72_128_+ 72–128 45.00 10.56 0.19 100.0 ENST00000666735 lncRNA vagina (Tissue)
ENST00000666735.2 ENST00000666735.2_77_128_+ 77–128 10.00 2.35 0.04 100.0 ENST00000666735 lncRNA vagina (Tissue)
ENST00000666972.1 ENST00000666972.1_2488_2551_+ 2488–2551 3629.00 85.29 15.01 100.0 MEG8-242 lncRNA vagina (Tissue)
ENST00000667814.1 ENST00000667814.1_36_68_+ 36–68 352.00 0.29 1.46 100.0 MEG8-244 lncRNA vagina (Tissue)
ENST00000667814.1 ENST00000667814.1_2_32_+ 2–32 551.00 0.45 2.28 100.0 MEG8-244 lncRNA vagina (Tissue)
ENST00000667814.1 ENST00000667814.1_2_68_+ 2–68 120176.00 98.13 496.97 99.74 MEG8-244 lncRNA vagina (Tissue)
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 958.00 0.09 3.96 100.0 SNHG1-248 lncRNA vagina (Tissue)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 11.00 0.00 0.05 100.0 SNHG1-248 lncRNA vagina (Tissue)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 3792.00 0.36 15.68 98.29 SNHG1-248 lncRNA vagina (Tissue)
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 1940.89 0.18 8.03 66.95 SNHG1-248 lncRNA vagina (Tissue)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 2331.00 0.22 9.64 77.26 SNHG1-248 lncRNA vagina (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 776024.00 73.61 3209.13 99.55 SNHG1-248 lncRNA vagina (Tissue)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 872.00 0.08 3.61 81.72 SNHG1-248 lncRNA vagina (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 41548.00 3.94 171.82 99.01 SNHG1-248 lncRNA vagina (Tissue)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 6056.00 0.57 25.04 100.0 SNHG1-248 lncRNA vagina (Tissue)