ENCFF310THB

Library Details

Organism: Homo Sapiens
Biosample: vagina (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR812JEU
Description: Part of ENCODE experiment ENCSR812JEU. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's vagina tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 1897.00 74.60 7.84 100.0 MIR497HG-207 lncRNA vagina (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 10466.00 97.41 43.28 97.97 MIR22HG-212 lncRNA vagina (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 160.00 39.31 0.66 47.06 SNORD53B-201 snoRNA vagina (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 180.00 44.23 0.74 52.94 SNORD53B-201 snoRNA vagina (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 91.00 78.45 0.38 100.0 ENST00000578036 lncRNA vagina (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 597.00 86.77 2.47 100.0 RPL23A-207 protein coding vagina (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 158.00 87.78 0.65 100.0 MIR744-201 miRNA vagina (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 74.00 62.18 0.31 100.0 MIR378C-201 miRNA vagina (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 1036.00 77.95 4.28 83.35 MIR142HG-201 lncRNA vagina (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 17.00 1.28 0.07 4.56 MIR142HG-201 lncRNA vagina (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 1928.77 0.10 7.98 56.46 RPL23A-208 retained intron vagina (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 1491.09 0.07 6.17 53.04 RPL23A-208 retained intron vagina (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 1589497.00 78.33 6573.13 86.68 RPL23A-208 retained intron vagina (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 429710.00 21.18 1777.00 93.46 RPL23A-208 retained intron vagina (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 13.00 1.75 0.05 100.0 MIR133A1HG-202 lncRNA vagina (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 7841.00 6.03 32.43 49.83 RPL17-211 retained intron vagina (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 14598.00 11.22 60.37 65.14 RPL17-211 retained intron vagina (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 238.00 0.18 0.98 100.0 RPL17-211 retained intron vagina (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 52339.00 40.23 216.44 95.46 RPL17-211 retained intron vagina (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 51440.00 39.54 212.72 96.74 RPL17-211 retained intron vagina (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 166.00 40.00 0.69 45.48 ENST00000582320 lncRNA vagina (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 7.00 1.69 0.03 100.0 ENST00000582320 lncRNA vagina (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 8.00 1.93 0.03 100.0 ENST00000582320 lncRNA vagina (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 4442.00 17.82 18.37 100.0 RPL17-214 retained intron vagina (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 8958.26 35.94 37.05 50.62 RPL17-214 retained intron vagina (Tissue)