ENCFF310THB

Library Details

Organism: Homo Sapiens
Biosample: vagina (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR812JEU
Description: Part of ENCODE experiment ENCSR812JEU. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's vagina tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 526.00 11.35 2.18 100.0 ENST00000554988 lncRNA vagina (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 1677.00 36.20 6.93 100.0 ENST00000554988 lncRNA vagina (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 164.00 0.73 0.68 100.0 SNHG14-220 retained intron vagina (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 768.00 3.40 3.18 100.0 SNHG14-220 retained intron vagina (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 20527.00 90.89 84.89 100.0 SNHG14-220 retained intron vagina (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 98.00 0.43 0.41 100.0 SNHG14-220 retained intron vagina (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 228.00 99.13 0.94 100.0 TEKT4P2-201 transcribed unprocessed pseudogene vagina (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 660.00 2.46 2.73 100.0 RPL4-202 retained intron vagina (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 21355.00 79.63 88.31 92.86 RPL4-202 retained intron vagina (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 8.00 0.03 0.03 100.0 RPL4-202 retained intron vagina (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 714.00 2.66 2.95 100.0 RPL4-202 retained intron vagina (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 1228.00 4.58 5.08 100.0 RPL4-202 retained intron vagina (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 1.00 0.00 0.00 100.0 ENST00000563103 lncRNA vagina (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 1680.00 57.01 6.95 100.0 RPL4-207 retained intron vagina (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 214.00 7.26 0.88 100.0 RPL4-207 retained intron vagina (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 1728.00 1.05 7.15 63.91 ENST00000565336 lncRNA vagina (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 160023.00 97.27 661.75 99.52 ENST00000565336 lncRNA vagina (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 18.00 0.16 0.07 4.55 RBMX-210 retained intron vagina (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 3966.00 36.18 16.40 100.0 RBMX-210 retained intron vagina (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 3289.00 30.00 13.60 100.0 RBMX-210 retained intron vagina (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 138.00 20.66 0.57 100.0 RPL4-214 retained intron vagina (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 11.00 0.08 0.05 100.0 POLG-DT-202 lncRNA vagina (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 10155.73 75.01 42.00 85.16 POLG-DT-202 lncRNA vagina (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 2878.48 21.26 11.90 24.8 POLG-DT-202 lncRNA vagina (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 3670.00 75.56 15.18 100.0 ENST00000570843 lncRNA vagina (Tissue)