ENCFF310THB

Library Details

Organism: Homo Sapiens
Biosample: vagina (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR812JEU
Description: Part of ENCODE experiment ENCSR812JEU. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's vagina tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 9332.44 37.44 38.59 48.98 RPL17-214 retained intron vagina (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 249730.00 98.43 1032.72 99.94 SNORD43-201 snoRNA vagina (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 18.00 0.01 0.07 100.0 SNORD43-201 snoRNA vagina (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 59.00 28.78 0.24 100.0 MIR151B-201 miRNA vagina (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 89.00 5.38 0.37 100.0 SNORD3A-201 snoRNA vagina (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 1801.00 61.91 7.45 100.0 NSRP1-214 protein coding vagina (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 643.00 22.10 2.66 81.6 NSRP1-214 protein coding vagina (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 1856.00 35.86 7.68 95.47 MIR23AHG-201 lncRNA vagina (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 524.00 10.12 2.17 86.33 MIR23AHG-201 lncRNA vagina (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 1080.00 20.87 4.47 91.53 MIR23AHG-201 lncRNA vagina (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 625.00 12.07 2.58 85.97 MIR23AHG-201 lncRNA vagina (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 4.00 20.00 0.02 100.0 ODAD3-204 nonsense mediated decay vagina (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 235.00 2.61 0.97 100.0 VMP1-217 retained intron vagina (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 113.00 1.25 0.47 100.0 VMP1-217 retained intron vagina (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 5866.00 65.13 24.26 74.29 VMP1-217 retained intron vagina (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 481.00 23.39 1.99 100.0 C19orf48P-203 retained intron vagina (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 81.00 3.94 0.33 100.0 C19orf48P-203 retained intron vagina (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 1947357.00 72.43 8053.00 74.04 CARMN-209 lncRNA vagina (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 63.00 50.00 0.26 100.0 PPFIA1P1-201 processed pseudogene vagina (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 788.00 34.28 3.26 100.0 SNORD114-21-201 snoRNA vagina (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 1117.00 48.59 4.62 100.0 SNORD114-21-201 snoRNA vagina (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 2578.00 98.06 10.66 100.0 MIR98-201 miRNA vagina (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 69.00 35.94 0.29 100.0 SNORD113-5-201 snoRNA vagina (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 62.00 95.38 0.26 100.0 MIR15A-201 miRNA vagina (Tissue)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 6.00 54.55 0.02 100.0 MIR376C-201 miRNA vagina (Tissue)