ENCFF310THB

Library Details

Organism: Homo Sapiens
Biosample: vagina (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR812JEU
Description: Part of ENCODE experiment ENCSR812JEU. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's vagina tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 134.00 9.33 0.55 100.0 RPL7A-207 protein coding CDS not defined vagina (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 523.00 36.42 2.16 100.0 RPL7A-207 protein coding CDS not defined vagina (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 3.00 0.03 0.01 0.14 RN7SL2-201 misc RNA vagina (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 2663.00 92.95 11.01 100.0 RGS11-208 retained intron vagina (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 8250.00 76.57 34.12 91.36 NOP56-217 protein coding CDS not defined vagina (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 5.00 0.05 0.02 20.0 NOP56-217 protein coding CDS not defined vagina (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 475.00 2.12 1.96 100.0 RABGGTB-213 protein coding CDS not defined vagina (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 290.00 1.29 1.20 53.51 RABGGTB-213 protein coding CDS not defined vagina (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 1440.00 6.42 5.95 100.0 RABGGTB-213 protein coding CDS not defined vagina (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 1370.00 6.11 5.67 100.0 RABGGTB-213 protein coding CDS not defined vagina (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 252.00 1.12 1.04 46.49 RABGGTB-213 protein coding CDS not defined vagina (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 12082.00 53.85 49.96 84.37 RABGGTB-213 protein coding CDS not defined vagina (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 539.00 15.09 2.23 100.0 GNL3-211 retained intron vagina (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 2783.00 77.91 11.51 100.0 GNL3-211 retained intron vagina (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 74.00 9.31 0.31 100.0 RPL5-205 retained intron vagina (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 30.00 1.57 0.12 100.0 ZBED9-AS1-201 lncRNA vagina (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 1808.00 90.04 7.48 100.0 RPS3A-206 retained intron vagina (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 6182.00 97.46 25.56 100.0 COX7C-203 protein coding vagina (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 7979.00 36.49 33.00 99.68 RACK1-229 protein coding vagina (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 3532.17 16.15 14.61 47.85 RACK1-229 protein coding vagina (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 6210.59 28.40 25.68 67.82 RACK1-229 protein coding vagina (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 2151.00 9.84 8.90 100.0 RACK1-229 protein coding vagina (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 46.00 4.81 0.19 100.0 RACK1-230 retained intron vagina (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 1.00 0.10 0.00 9.09 RACK1-230 retained intron vagina (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 79.00 2.94 0.33 100.0 RNA5SP486-201 rRNA pseudogene vagina (Tissue)