ENCFF310THB

Library Details

Organism: Homo Sapiens
Biosample: vagina (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR812JEU
Description: Part of ENCODE experiment ENCSR812JEU. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's vagina tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 1975.00 87.00 8.17 100.0 SCARNA5-201 scaRNA vagina (Tissue)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 4138.00 1.47 17.11 47.25 RNY4-201 misc RNA vagina (Tissue)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 53.00 0.02 0.22 100.0 RNY4-201 misc RNA vagina (Tissue)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 204.00 0.07 0.84 100.0 RNY4-201 misc RNA vagina (Tissue)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 329.00 0.12 1.36 100.0 RNY4-201 misc RNA vagina (Tissue)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 152033.00 53.94 628.71 99.23 RNY4-201 misc RNA vagina (Tissue)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 103676.00 36.78 428.74 99.85 RNY4-201 misc RNA vagina (Tissue)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 5146.00 1.83 21.28 81.4 RNY4-201 misc RNA vagina (Tissue)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 590.00 0.21 2.44 76.03 RNY4-201 misc RNA vagina (Tissue)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 724.00 0.26 2.99 100.0 RNY4-201 misc RNA vagina (Tissue)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 58.00 0.02 0.24 38.16 RNY4-201 misc RNA vagina (Tissue)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 624.00 0.22 2.58 100.0 RNY4-201 misc RNA vagina (Tissue)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 520.00 71.23 2.15 79.75 MIR3142HG-201 lncRNA vagina (Tissue)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 15349.00 71.61 63.47 85.61 MIR151A-201 miRNA vagina (Tissue)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 3066.00 14.30 12.68 100.0 MIR151A-201 miRNA vagina (Tissue)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 1158.00 99.66 4.79 100.0 DENND3-221 protein coding vagina (Tissue)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 1450.00 14.47 6.00 71.92 WDR74-204 protein coding vagina (Tissue)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 398.00 3.97 1.65 100.0 WDR74-204 protein coding vagina (Tissue)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 64.00 0.64 0.26 100.0 WDR74-204 protein coding vagina (Tissue)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 555.00 5.54 2.30 100.0 WDR74-204 protein coding vagina (Tissue)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 306.00 3.05 1.27 69.39 WDR74-204 protein coding vagina (Tissue)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 135.00 1.35 0.56 30.61 WDR74-204 protein coding vagina (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 130.00 23.38 0.54 100.0 SCARNA9-201 lncRNA vagina (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 22251.00 96.61 92.02 100.0 TAF1D-215 retained intron vagina (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 96320.00 71.07 398.32 73.39 ENST00000548801 lncRNA vagina (Tissue)