ENCFF310THB

Library Details

Organism: Homo Sapiens
Biosample: vagina (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR812JEU
Description: Part of ENCODE experiment ENCSR812JEU. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's vagina tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 4121.00 79.83 17.04 89.7 B4GALNT2-202 protein coding vagina (Tissue)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 178.00 66.67 0.74 100.0 NDE1-202 protein coding vagina (Tissue)
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 7.00 77.78 0.03 100.0 MIR450B-201 miRNA vagina (Tissue)
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 22.00 16.42 0.09 100.0 MIR887-201 miRNA vagina (Tissue)
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 49.00 96.08 0.20 100.0 MIR889-201 miRNA vagina (Tissue)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 4.00 100.00 0.02 100.0 MIR548K-201 miRNA vagina (Tissue)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 214.00 53.37 0.88 100.0 MIR320B2-201 miRNA vagina (Tissue)
ENST00000408537.1 ENST00000408537.1_15_35_+ 15–35 14.00 100.00 0.06 100.0 MIR1271-201 miRNA vagina (Tissue)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 695.00 4.28 2.87 100.0 SNORD100-201 snoRNA vagina (Tissue)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 11217.00 69.12 46.39 100.0 SNORD100-201 snoRNA vagina (Tissue)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 2310.00 14.23 9.55 100.0 SNORD100-201 snoRNA vagina (Tissue)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 231.00 1.42 0.96 100.0 SNORD100-201 snoRNA vagina (Tissue)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 1223.00 63.60 5.06 100.0 SNORD111B-201 snoRNA vagina (Tissue)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 74.00 1.47 0.31 100.0 RNU2-36P-201 snRNA vagina (Tissue)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 262.00 5.20 1.08 100.0 RNU2-36P-201 snRNA vagina (Tissue)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 894.00 2.14 3.70 100.0 SNORD19C-201 snoRNA vagina (Tissue)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 39913.00 95.56 165.05 99.03 SNORD19C-201 snoRNA vagina (Tissue)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 2008.00 73.69 8.30 100.0 SNORD12B-201 snoRNA vagina (Tissue)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 256.00 9.39 1.06 100.0 SNORD12B-201 snoRNA vagina (Tissue)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 45.00 19.74 0.19 100.0 Y_RNA.609-201 misc RNA vagina (Tissue)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 8.00 18.60 0.03 100.0 Y_RNA.612-201 misc RNA vagina (Tissue)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 140.00 7.83 0.58 100.0 SNORD71-201 snoRNA vagina (Tissue)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 308.00 17.24 1.27 100.0 SNORD71-201 snoRNA vagina (Tissue)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 3486.00 90.05 14.42 96.19 MIR194-2HG-201 lncRNA vagina (Tissue)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 336.00 8.68 1.39 38.93 MIR194-2HG-201 lncRNA vagina (Tissue)