ENCFF310THB

Library Details

Organism: Homo Sapiens
Biosample: vagina (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR812JEU
Description: Part of ENCODE experiment ENCSR812JEU. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's vagina tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000387459.1 ENST00000387459.1_1_62_+ 1–62 2341.00 0.32 9.68 75.42 MT-TE-201 Mt tRNA vagina (Tissue)
ENST00000388006.1 ENST00000388006.1_7_28_+ 7–28 31.00 37.35 0.13 100.0 MIR196A1-201 miRNA vagina (Tissue)
ENST00000389680.2 ENST00000389680.2_316_354_+ 316–354 934.00 10.40 3.86 100.0 MT-RNR1-201 Mt rRNA vagina (Tissue)
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 56.00 81.16 0.23 100.0 MIR454-201 miRNA vagina (Tissue)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 58.00 55.24 0.24 100.0 MIR501-201 miRNA vagina (Tissue)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 438.00 90.50 1.81 100.0 MIR769-201 miRNA vagina (Tissue)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 30.00 62.50 0.12 100.0 KRTAP19-1-201 protein coding vagina (Tissue)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 26.00 37.14 0.11 100.0 MIR708-201 miRNA vagina (Tissue)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 4.00 100.00 0.02 100.0 MIR509-3-201 miRNA vagina (Tissue)
ENST00000390751.3 ENST00000390751.3_47_68_+ 47–68 1.00 25.00 0.00 100.0 MIR543-201 miRNA vagina (Tissue)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 2.00 100.00 0.01 100.0 MIR301B-201 miRNA vagina (Tissue)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 158.00 49.69 0.65 84.49 RNU1-82P-201 snRNA vagina (Tissue)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 109.00 2.00 0.45 100.0 SNORD66-201 snoRNA vagina (Tissue)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 467.00 8.56 1.93 100.0 SNORD66-201 snoRNA vagina (Tissue)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 2005.00 36.76 8.29 65.67 SNORD66-201 snoRNA vagina (Tissue)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 14.00 60.87 0.06 100.0 U3.17-201 snoRNA vagina (Tissue)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 1832.00 88.50 7.58 100.0 SNORD17-201 snoRNA vagina (Tissue)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 137.00 55.69 0.57 100.0 SNORD72-201 snoRNA vagina (Tissue)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 1417.00 78.33 5.86 100.0 SNORD70B-201 snoRNA vagina (Tissue)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 6079.00 79.12 25.14 91.19 RNY4P18-201 misc RNA vagina (Tissue)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 21812.00 68.06 90.20 100.0 SNORD69-201 snoRNA vagina (Tissue)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 3231.00 10.08 13.36 100.0 SNORD69-201 snoRNA vagina (Tissue)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 3727.00 11.63 15.41 100.0 SNORD69-201 snoRNA vagina (Tissue)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 628.00 1.96 2.60 100.0 SNORD69-201 snoRNA vagina (Tissue)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 4121.00 79.83 17.04 89.7 B4GALNT2-202 protein coding vagina (Tissue)