ENCFF310THB

Library Details

Organism: Homo Sapiens
Biosample: vagina (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR812JEU
Description: Part of ENCODE experiment ENCSR812JEU. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's vagina tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 270.00 13.92 1.12 100.0 SNORD62B-201 snoRNA vagina (Tissue)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 2.00 0.10 0.01 100.0 SNORD62B-201 snoRNA vagina (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 260.00 13.41 1.08 100.0 SNORD62B-201 snoRNA vagina (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 593.00 30.58 2.45 85.94 SNORD62B-201 snoRNA vagina (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 31.00 96.88 0.13 100.0 MRPL32-203 nonsense mediated decay vagina (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 5.00 29.41 0.02 100.0 ENST00000436739 lncRNA vagina (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 27605.00 75.51 114.16 95.94 TMEM107-204 protein coding vagina (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 139.00 0.38 0.57 100.0 TMEM107-204 protein coding vagina (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 2982.00 8.16 12.33 94.94 TMEM107-204 protein coding vagina (Tissue)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 4.00 0.01 0.02 100.0 TMEM107-204 protein coding vagina (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 1534.00 86.42 6.34 100.0 SNHG16-201 lncRNA vagina (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 39207.00 83.82 162.13 95.16 SNORD105B-201 snoRNA vagina (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 143.00 36.39 0.59 59.09 SNORD121B-201 snoRNA vagina (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 266.00 26.71 1.10 100.0 SNORD127-201 snoRNA vagina (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 17044.00 96.07 70.48 100.0 SNORD42B-201 snoRNA vagina (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 277.00 3.56 1.15 100.0 RNY4P25-201 misc RNA vagina (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 238.00 77.78 0.98 100.0 SNORD121A-201 snoRNA vagina (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 3844.00 96.61 15.90 100.0 SNORD126-201 snoRNA vagina (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 1046.00 53.18 4.33 100.0 SNHG12-201 retained intron vagina (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 3066.00 96.38 12.68 100.0 SMC1A-204 retained intron vagina (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 183.00 14.12 0.76 100.0 DDX39B-219 retained intron vagina (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 544.00 41.98 2.25 100.0 DDX39B-219 retained intron vagina (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 2226.00 85.12 9.21 100.0 RPS8-206 protein coding CDS not defined vagina (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 2492.00 17.05 10.31 99.09 RPL13-207 retained intron vagina (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 4952.00 33.89 20.48 100.0 RPL13-207 retained intron vagina (Tissue)