ENCFF299ETH

Library Details

Organism: Homo Sapiens
Biosample: OCI-LY7 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR740DKM
Description: Part of ENCODE experiment ENCSR740DKM. The libraries contained in this experiment come from independent growths of cell line, Oci-Ly-7. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 6.00 0.05 0.06 22.22 LINC02739-203 lncRNA OCI-LY7 (Cell line)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 11.00 0.09 0.11 100.0 LINC02739-203 lncRNA OCI-LY7 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 96.00 0.78 0.99 100.0 LINC02739-203 lncRNA OCI-LY7 (Cell line)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 6687.00 54.45 69.28 100.0 LINC02739-203 lncRNA OCI-LY7 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 21.00 0.17 0.22 77.78 LINC02739-203 lncRNA OCI-LY7 (Cell line)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 28.00 2.49 0.29 100.0 SNHG10-212 lncRNA OCI-LY7 (Cell line)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 49563.75 86.83 513.53 92.55 SNHG19-202 lncRNA OCI-LY7 (Cell line)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 4510.58 7.90 46.73 14.1 SNHG19-202 lncRNA OCI-LY7 (Cell line)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 1.86 0.00 0.02 62.16 SNHG19-202 lncRNA OCI-LY7 (Cell line)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 0.72 0.00 0.01 36.02 SNHG19-202 lncRNA OCI-LY7 (Cell line)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 47.00 5.95 0.49 100.0 RPSA-216 retained intron OCI-LY7 (Cell line)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 3.00 100.00 0.03 100.0 MIR99AHG-370 lncRNA OCI-LY7 (Cell line)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 1727.00 95.73 17.89 100.0 HPS4-237 retained intron OCI-LY7 (Cell line)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 39.00 8.44 0.40 100.0 DNAJC5-203 nonsense mediated decay OCI-LY7 (Cell line)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 110.00 6.71 1.14 100.0 ENST00000707189 TEC OCI-LY7 (Cell line)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 18.00 0.01 0.19 100.0 MIR17HG-214 lncRNA OCI-LY7 (Cell line)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 117.00 0.06 1.21 100.0 MIR17HG-214 lncRNA OCI-LY7 (Cell line)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 36660.69 20.13 379.84 26.31 MIR17HG-214 lncRNA OCI-LY7 (Cell line)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 511.00 0.28 5.29 100.0 MIR17HG-214 lncRNA OCI-LY7 (Cell line)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 2116.00 1.16 21.92 100.0 MIR17HG-214 lncRNA OCI-LY7 (Cell line)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 912.00 0.50 9.45 100.0 MIR17HG-214 lncRNA OCI-LY7 (Cell line)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 867.00 0.48 8.98 100.0 MIR17HG-214 lncRNA OCI-LY7 (Cell line)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 7296.00 4.01 75.59 100.0 MIR17HG-214 lncRNA OCI-LY7 (Cell line)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 129879.81 71.31 1345.69 80.78 MIR17HG-214 lncRNA OCI-LY7 (Cell line)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 230.00 0.08 2.38 100.0 SNHG32-223 lncRNA OCI-LY7 (Cell line)