ENCFF299ETH

Library Details

Organism: Homo Sapiens
Biosample: OCI-LY7 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR740DKM
Description: Part of ENCODE experiment ENCSR740DKM. The libraries contained in this experiment come from independent growths of cell line, Oci-Ly-7. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 71.00 0.01 0.74 100.0 SNHG1-248 lncRNA OCI-LY7 (Cell line)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 471.00 0.09 4.88 61.97 SNHG1-248 lncRNA OCI-LY7 (Cell line)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 131.00 0.03 1.36 100.0 SNHG1-248 lncRNA OCI-LY7 (Cell line)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 112.00 0.02 1.16 100.0 SNHG1-248 lncRNA OCI-LY7 (Cell line)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 206.00 0.04 2.13 100.0 SNHG1-248 lncRNA OCI-LY7 (Cell line)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 3.00 33.33 0.03 100.0 SNHG14-315 lncRNA OCI-LY7 (Cell line)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 1.00 11.11 0.01 100.0 SNHG14-315 lncRNA OCI-LY7 (Cell line)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 2.00 22.22 0.02 100.0 SNHG14-315 lncRNA OCI-LY7 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 2973.00 1.14 30.80 100.0 SNHG5-273 lncRNA OCI-LY7 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 67497.01 25.89 699.34 33.06 SNHG5-273 lncRNA OCI-LY7 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 94.00 0.04 0.97 100.0 SNHG5-273 lncRNA OCI-LY7 (Cell line)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 316.00 0.12 3.27 100.0 SNHG5-273 lncRNA OCI-LY7 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 168935.54 64.81 1750.35 73.1 SNHG5-273 lncRNA OCI-LY7 (Cell line)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 2167.00 0.83 22.45 60.53 SNHG5-273 lncRNA OCI-LY7 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 121.00 0.05 1.25 100.0 SNHG5-273 lncRNA OCI-LY7 (Cell line)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 3029.00 1.16 31.38 100.0 SNHG5-273 lncRNA OCI-LY7 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 163.00 0.06 1.69 100.0 SNHG5-273 lncRNA OCI-LY7 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 9030.00 3.46 93.56 94.52 SNHG5-273 lncRNA OCI-LY7 (Cell line)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 1.00 33.33 0.01 100.0 SNHG14-336 lncRNA OCI-LY7 (Cell line)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 1.00 33.33 0.01 50.0 SNHG14-336 lncRNA OCI-LY7 (Cell line)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 1.00 100.00 0.01 100.0 SNHG14-341 lncRNA OCI-LY7 (Cell line)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 53.00 1.79 0.55 100.0 NCL-211 retained intron OCI-LY7 (Cell line)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 1.00 0.15 0.01 100.0 NCL-216 retained intron OCI-LY7 (Cell line)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 4774.00 87.28 49.46 100.0 FMN2-209 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 6.00 0.05 0.06 100.0 LINC02739-203 lncRNA OCI-LY7 (Cell line)