ENCFF299ETH

Library Details

Organism: Homo Sapiens
Biosample: OCI-LY7 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR740DKM
Description: Part of ENCODE experiment ENCSR740DKM. The libraries contained in this experiment come from independent growths of cell line, Oci-Ly-7. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 78.00 1.28 0.81 100.0 HSPA8-215 retained intron OCI-LY7 (Cell line)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 786.00 29.65 8.14 100.0 RPS2-215 retained intron OCI-LY7 (Cell line)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 17.00 77.27 0.18 89.47 ENST00000548801 lncRNA OCI-LY7 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 88.00 2.25 0.91 100.0 ENST00000554988 lncRNA OCI-LY7 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 949.00 24.30 9.83 100.0 ENST00000554988 lncRNA OCI-LY7 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 543.00 13.91 5.63 100.0 ENST00000554988 lncRNA OCI-LY7 (Cell line)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 155.00 95.09 1.61 100.0 TEKT4P2-201 transcribed unprocessed pseudogene OCI-LY7 (Cell line)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 152.00 0.33 1.57 100.0 RPL4-202 retained intron OCI-LY7 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 42483.00 92.13 440.17 99.12 RPL4-202 retained intron OCI-LY7 (Cell line)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 34.00 0.07 0.35 100.0 RPL4-202 retained intron OCI-LY7 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 351.00 0.76 3.64 100.0 RPL4-202 retained intron OCI-LY7 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 48.00 0.10 0.50 100.0 RPL4-202 retained intron OCI-LY7 (Cell line)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 269.00 5.15 2.79 100.0 ENST00000563103 lncRNA OCI-LY7 (Cell line)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 440.00 1.96 4.56 100.0 RPL4-207 retained intron OCI-LY7 (Cell line)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 18403.00 81.84 190.67 100.0 RPL4-207 retained intron OCI-LY7 (Cell line)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 369.00 10.60 3.82 83.3 ENST00000565336 lncRNA OCI-LY7 (Cell line)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 684.00 19.65 7.09 83.93 ENST00000565336 lncRNA OCI-LY7 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 2640.00 6.02 27.35 100.0 RBMX-210 retained intron OCI-LY7 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 38461.00 87.69 398.50 99.5 RBMX-210 retained intron OCI-LY7 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 732.00 1.67 7.58 100.0 RBMX-210 retained intron OCI-LY7 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 56.00 0.13 0.58 100.0 RBMX-210 retained intron OCI-LY7 (Cell line)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 274.00 6.44 2.84 100.0 RPL4-214 retained intron OCI-LY7 (Cell line)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 1742.00 40.96 18.05 100.0 RPL4-214 retained intron OCI-LY7 (Cell line)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 876.63 24.53 9.08 72.69 POLG-DT-202 lncRNA OCI-LY7 (Cell line)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 892.33 24.97 9.25 54.88 POLG-DT-202 lncRNA OCI-LY7 (Cell line)