ENCFF299ETH

Library Details

Organism: Homo Sapiens
Biosample: OCI-LY7 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR740DKM
Description: Part of ENCODE experiment ENCSR740DKM. The libraries contained in this experiment come from independent growths of cell line, Oci-Ly-7. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 43.00 0.40 0.45 100.0 SNORD62B-201 snoRNA OCI-LY7 (Cell line)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 7651.00 71.08 79.27 86.6 SNORD62B-201 snoRNA OCI-LY7 (Cell line)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 75.00 92.59 0.78 100.0 MRPL32-203 nonsense mediated decay OCI-LY7 (Cell line)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 223.00 98.67 2.31 100.0 ENST00000436739 lncRNA OCI-LY7 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 3592.00 34.14 37.22 100.0 TMEM107-204 protein coding OCI-LY7 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 96.00 0.91 0.99 28.32 TMEM107-204 protein coding OCI-LY7 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 261.00 2.48 2.70 100.0 TMEM107-204 protein coding OCI-LY7 (Cell line)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 249.00 2.37 2.58 41.5 TMEM107-204 protein coding OCI-LY7 (Cell line)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 774.00 27.77 8.02 60.94 SNHG16-201 lncRNA OCI-LY7 (Cell line)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 1029.00 36.92 10.66 100.0 SNHG16-201 lncRNA OCI-LY7 (Cell line)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 20433.00 93.79 211.71 96.83 SNORD105B-201 snoRNA OCI-LY7 (Cell line)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 1356.00 66.73 14.05 95.63 SNORD121B-201 snoRNA OCI-LY7 (Cell line)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 39.00 0.42 0.40 100.0 SNORD127-201 snoRNA OCI-LY7 (Cell line)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 8459.00 91.20 87.64 99.45 SNORD127-201 snoRNA OCI-LY7 (Cell line)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 8643.00 82.76 89.55 100.0 SNORD42B-201 snoRNA OCI-LY7 (Cell line)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 15117.00 73.42 156.63 100.0 RNY4P25-201 misc RNA OCI-LY7 (Cell line)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 231.00 41.55 2.39 100.0 SNORD121A-201 snoRNA OCI-LY7 (Cell line)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 1490.00 39.90 15.44 60.94 SNORD126-201 snoRNA OCI-LY7 (Cell line)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 1983.00 53.11 20.55 80.22 SNORD126-201 snoRNA OCI-LY7 (Cell line)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 6982.00 84.45 72.34 88.31 SNORD124-201 snoRNA OCI-LY7 (Cell line)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 23.00 1.39 0.24 100.0 SNHG12-201 retained intron OCI-LY7 (Cell line)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 511.00 14.79 5.29 100.0 RPL3-212 retained intron OCI-LY7 (Cell line)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 1428.00 41.33 14.80 92.85 RPL3-212 retained intron OCI-LY7 (Cell line)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 67.00 94.37 0.69 100.0 SMC1A-204 retained intron OCI-LY7 (Cell line)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 62474.00 92.95 647.30 99.75 RABGGTB-208 protein coding CDS not defined OCI-LY7 (Cell line)