ENCFF299ETH

Library Details

Organism: Homo Sapiens
Biosample: OCI-LY7 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR740DKM
Description: Part of ENCODE experiment ENCSR740DKM. The libraries contained in this experiment come from independent growths of cell line, Oci-Ly-7. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 160.00 15.79 1.66 100.0 DDX39B-219 retained intron OCI-LY7 (Cell line)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 90.00 8.88 0.93 84.91 DDX39B-219 retained intron OCI-LY7 (Cell line)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 117.00 11.55 1.21 100.0 DDX39B-219 retained intron OCI-LY7 (Cell line)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 3631.00 84.90 37.62 100.0 RPS8-206 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 7486.00 77.76 77.56 99.81 RPL13-207 retained intron OCI-LY7 (Cell line)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 683.00 7.09 7.08 100.0 RPL13-207 retained intron OCI-LY7 (Cell line)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 1832.00 0.48 18.98 82.01 EIF4A2-219 retained intron OCI-LY7 (Cell line)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 118.00 0.03 1.22 100.0 EIF4A2-219 retained intron OCI-LY7 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 794.00 0.21 8.23 59.08 EIF4A2-219 retained intron OCI-LY7 (Cell line)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 615.00 0.16 6.37 53.57 EIF4A2-219 retained intron OCI-LY7 (Cell line)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 851.00 0.22 8.82 80.97 EIF4A2-219 retained intron OCI-LY7 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 1185.00 0.31 12.28 62.86 EIF4A2-219 retained intron OCI-LY7 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 1018.00 0.27 10.55 75.07 EIF4A2-219 retained intron OCI-LY7 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 174752.00 45.83 1810.61 84.86 EIF4A2-219 retained intron OCI-LY7 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 488.00 0.13 5.06 100.0 EIF4A2-219 retained intron OCI-LY7 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 177102.00 46.44 1834.96 96.79 EIF4A2-219 retained intron OCI-LY7 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 4130.00 1.08 42.79 100.0 EIF4A2-219 retained intron OCI-LY7 (Cell line)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 1266.00 0.33 13.12 63.62 EIF4A2-219 retained intron OCI-LY7 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 1.00 0.00 0.01 100.0 EIF4A2-219 retained intron OCI-LY7 (Cell line)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 932.00 0.24 9.66 60.25 EIF4A2-219 retained intron OCI-LY7 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 217.00 0.06 2.25 100.0 EIF4A2-219 retained intron OCI-LY7 (Cell line)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 14615.00 95.23 151.43 100.0 RPS8-207 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 81.00 6.74 0.84 100.0 RPL7A-206 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 219.00 18.22 2.27 100.0 RPL7A-206 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 248.00 20.63 2.57 100.0 RPL7A-206 protein coding CDS not defined OCI-LY7 (Cell line)