ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365382.1 ENST00000365382.1_1_88_+ 1–88 3724.00 61.50 4.37 100.0 SNORD14C-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365391.1 ENST00000365391.1_2_82_+ 2–82 2714.00 68.35 3.19 100.0 SNORD115-44-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365394.1 ENST00000365394.1_85_96_+ 85–96 127.00 39.32 0.15 100.0 RNA5SP77-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000365423.1 ENST00000365423.1_4_67_+ 4–67 9108.00 63.94 10.69 89.66 SNORD114-22-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365423.1 ENST00000365423.1_35_67_+ 35–67 3313.00 23.26 3.89 100.0 SNORD114-22-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365444.1 ENST00000365444.1_3_69_+ 3–69 86359.00 94.80 101.39 100.0 SNORD6-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365444.1 ENST00000365444.1_30_69_+ 30–69 1016.00 1.12 1.19 100.0 SNORD6-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365484.1 ENST00000365484.1_1_95_+ 1–95 3656.00 11.70 4.29 100.0 RNY3-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 2555.00 8.77 3.00 80.07 SNORD82-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_3_48_+ 3–48 5124.63 17.60 6.02 49.9 SNORD82-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 5547.36 19.05 6.51 54.02 SNORD82-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 1044.00 3.59 1.23 100.0 SNORD82-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 367.00 1.26 0.43 100.0 SNORD82-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 10329.00 35.47 12.13 99.19 SNORD82-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 1409.00 4.84 1.65 100.0 SNORD82-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 108533.00 96.87 127.42 98.05 MIR146B-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 12.00 3.90 0.01 100.0 SNHG20-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 77.00 14.31 0.09 100.0 ATP5MK-205 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 114.00 21.19 0.13 100.0 ATP5MK-205 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 51.00 10.49 0.06 100.0 LINC01556-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 76.00 27.94 0.09 100.0 ATAD3A-202 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 68.00 30.91 0.08 53.12 TMC5-202 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 360.00 39.82 0.42 100.0 ZMYM2-203 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 105.00 0.86 0.12 100.0 RNVU1-7-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000383884.1 ENST00000383884.1_1_75_+ 1–75 21111.00 88.18 24.78 100.0 SNORD24-201 snoRNA smooth muscle cell (In vitro differentiated cells)