ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000364830.3 ENST00000364830.3_3_67_+ 3–67 132.00 32.51 0.15 100.0 SNORD113-3-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364884.1 ENST00000364884.1_1_66_+ 1–66 66769.00 93.64 78.39 100.0 SNORD52-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364915.1 ENST00000364915.1_2_74_+ 2–74 10371.00 55.14 12.18 76.01 SNORD117-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364915.1 ENST00000364915.1_1_76_+ 1–76 3274.00 17.41 3.84 28.16 SNORD117-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364969.1 ENST00000364969.1_4_62_+ 4–62 262.00 3.67 0.31 100.0 SNORD114-3-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364969.1 ENST00000364969.1_38_71_+ 38–71 45.00 0.63 0.05 100.0 SNORD114-3-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364969.1 ENST00000364969.1_3_71_+ 3–71 6125.00 85.77 7.19 92.56 SNORD114-3-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364991.1 ENST00000364991.1_17_30_+ 17–30 10.00 1.26 0.01 100.0 RNA5SP298-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000365037.1 ENST00000365037.1_2_82_+ 2–82 2811.00 71.60 3.30 100.0 SNORD115-38-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365073.1 ENST00000365073.1_2_81_+ 2–81 5446.00 61.72 6.39 100.0 SNORD115-10-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365080.1 ENST00000365080.1_3_67_+ 3–67 1112.00 89.03 1.31 100.0 SNORD113-9-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365099.1 ENST00000365099.1_2_82_+ 2–82 530.00 39.85 0.62 100.0 SNORD115-20-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365161.1 ENST00000365161.1_1_68_+ 1–68 24255.00 88.16 28.48 100.0 SNORD38A-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365161.1 ENST00000365161.1_1_41_+ 1–41 194.00 0.71 0.23 100.0 SNORD38A-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365161.1 ENST00000365161.1_1_38_+ 1–38 1643.00 5.97 1.93 100.0 SNORD38A-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365178.1 ENST00000365178.1_4_67_+ 4–67 3373.00 83.51 3.96 94.06 SNORD114-20-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 10208.00 13.07 11.98 100.0 7SK.1-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000365328.1 ENST00000365328.1_273_331_+ 273–331 5238.00 6.71 6.15 78.11 7SK.1-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000365328.1 ENST00000365328.1_260_331_+ 260–331 5555.00 7.11 6.52 100.0 7SK.1-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000365328.1 ENST00000365328.1_1_76_+ 1–76 1011.00 1.29 1.19 100.0 7SK.1-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 8391.00 10.74 9.85 100.0 7SK.1-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000365328.1 ENST00000365328.1_1_63_+ 1–63 1243.00 1.59 1.46 92.07 7SK.1-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000365328.1 ENST00000365328.1_282_331_+ 282–331 4036.00 5.17 4.74 100.0 7SK.1-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000365328.1 ENST00000365328.1_270_331_+ 270–331 4038.00 5.17 4.74 48.48 7SK.1-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000365328.1 ENST00000365328.1_277_331_+ 277–331 6132.00 7.85 7.20 80.68 7SK.1-201 misc RNA smooth muscle cell (In vitro differentiated cells)