ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 1831.00 0.08 2.15 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 1826.00 0.08 2.14 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 6684.00 0.28 7.85 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 101.00 0.00 0.12 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 388.00 0.02 0.46 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 1090.00 0.05 1.28 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 4809.00 0.20 5.65 72.51 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 7821.00 0.33 9.18 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 57258.00 2.42 67.22 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 62243.00 2.63 73.07 98.88 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 358071.00 15.14 420.38 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 102.00 0.00 0.12 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 18201.00 0.77 21.37 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 213657.00 9.04 250.83 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 1029.00 0.04 1.21 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 104.00 4.84 0.12 100.0 FTX-219 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 1398.00 65.11 1.64 85.82 FTX-219 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 211.00 0.59 0.25 18.1 CTC1-214 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 5959.00 16.72 7.00 97.19 CTC1-214 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 1082.00 3.04 1.27 67.12 CTC1-214 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 955.00 2.68 1.12 81.9 CTC1-214 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 1133.00 3.18 1.33 75.23 CTC1-214 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 18618.00 52.23 21.86 100.0 CTC1-214 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 907.00 2.54 1.06 100.0 CTC1-214 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 619.00 1.74 0.73 100.0 CTC1-214 protein coding smooth muscle cell (In vitro differentiated cells)