ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 10.22 0.01 0.01 40.9 MIR106AHG-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 27.00 2.04 0.03 100.0 MEG8-222 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 208.00 15.73 0.24 100.0 MEG8-222 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 18133.00 6.67 21.29 95.01 SNHG14-224 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 106408.00 39.12 124.92 97.67 SNHG14-224 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 67689.00 24.89 79.47 100.0 SNHG14-224 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_5267_5357_+ 5267–5357 33599.00 12.35 39.45 97.0 SNHG14-224 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 406.00 0.15 0.48 100.0 SNHG14-224 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 3379.00 1.24 3.97 45.58 SNHG14-224 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 8637.00 3.18 10.14 76.88 SNHG14-224 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 5914.00 2.17 6.94 58.33 SNHG14-224 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 2098.42 5.64 2.46 65.27 5S_rRNA.20-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 7682.00 23.09 9.02 100.0 HSPA9-211 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 17695.00 53.19 20.77 83.3 HSPA9-211 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 26484.00 22.68 31.09 100.0 DNM3OS-205 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 593.00 0.03 0.70 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 4142.00 0.18 4.86 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 2518.00 0.11 2.96 65.62 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 37540.00 1.59 44.07 95.31 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 373.00 0.02 0.44 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 141.00 0.01 0.17 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 3361.00 0.14 3.95 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 1527923.00 64.62 1793.78 99.83 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 783.00 0.03 0.92 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 7228.00 0.31 8.49 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)