ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 4115.80 1.26 4.83 40.67 U2.3-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 219309.00 67.39 257.47 99.89 U2.3-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 13.00 0.00 0.02 100.0 U2.3-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 1250.00 0.38 1.47 64.67 U2.3-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 2695.00 0.83 3.16 57.68 U2.3-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 4154.00 1.28 4.88 92.97 U2.3-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 7127.41 2.19 8.37 70.43 U2.3-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 2112.00 0.65 2.48 100.0 U2.3-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 460.00 0.14 0.54 100.0 U2.3-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_75_+ 1–75 33.00 0.01 0.04 100.0 U2.3-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_22_116_+ 22–116 6334.00 1.95 7.44 100.0 U2.3-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 679.74 0.21 0.80 55.58 U2.3-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 567.46 0.17 0.67 41.06 U2.3-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 692.00 0.23 0.81 100.0 U2.6-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 174.00 54.89 0.20 100.0 ENST00000619323 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 540.00 22.58 0.63 100.0 SCARNA4-202 scaRNA smooth muscle cell (In vitro differentiated cells)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 3567.00 34.03 4.19 100.0 ENST00000625572 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000628177.1 ENST00000628177.1_1_79_+ 1–79 40316.00 96.13 47.33 100.0 ENST00000628177 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 31004.00 94.62 36.40 100.0 ENST00000630615 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 150.00 47.47 0.18 100.0 DMRT2-209 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 100.00 31.65 0.12 100.0 DMRT2-209 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 249.00 6.72 0.29 100.0 SNORD98-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 2859.00 77.15 3.36 100.0 SNORD98-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 53335.29 68.67 62.62 70.65 MIR106AHG-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 11.25 0.01 0.01 45.01 MIR106AHG-201 lncRNA smooth muscle cell (In vitro differentiated cells)