ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 1819.00 65.50 2.14 100.0 SNORD114-21-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 130.00 4.68 0.15 100.0 SNORD114-21-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 6114.00 68.94 7.18 100.0 SNORD115-40-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 16.00 94.12 0.02 100.0 MIR98-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 9023.00 93.65 10.59 100.0 SNORD113-5-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 9.00 64.29 0.01 100.0 MIR15A-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 9.00 90.00 0.01 100.0 MIR376C-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 444.00 59.92 0.52 100.0 SNHG21-206 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 14177.00 94.07 16.64 100.0 SNORD11B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 10723.00 84.10 12.59 100.0 SNORD91B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 39398.00 72.69 46.25 79.9 SNORD91A-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 656.00 43.53 0.77 95.21 MIR486-1-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 89734.00 42.09 105.35 66.79 NOP56-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 1544.00 0.72 1.81 100.0 NOP56-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 2433.00 1.14 2.86 100.0 NOP56-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 55716.00 26.14 65.41 87.01 NOP56-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 2427.00 8.29 2.85 70.33 RNA5-8SN2-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 1356.89 4.64 1.59 66.97 RNA5-8SN2-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 119.00 0.41 0.14 100.0 RNA5-8SN2-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 559.00 1.91 0.66 100.0 RNA5-8SN2-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 68.00 0.23 0.08 100.0 RNA5-8SN2-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 1334.00 4.56 1.57 35.47 RNA5-8SN2-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 840.88 2.87 0.99 41.5 RNA5-8SN2-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 19.00 100.00 0.02 100.0 MIR7974-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 489.00 0.15 0.57 100.0 U2.3-201 snRNA smooth muscle cell (In vitro differentiated cells)