ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 46275.00 98.66 54.33 100.0 COX7C-203 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 145.00 0.04 0.17 100.0 RACK1-229 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 245321.51 61.58 288.01 62.97 RACK1-229 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 1307.00 0.33 1.53 83.35 RACK1-229 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 130120.26 32.66 152.76 37.2 RACK1-229 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 456148.00 66.42 535.52 88.43 RACK1-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 220938.00 32.17 259.38 57.16 RACK1-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 140.00 4.08 0.16 100.0 RNA5SP486-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 1900.00 83.11 2.23 100.0 SCARNA5-201 scaRNA smooth muscle cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 23394.00 6.84 27.46 88.06 RNY4-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 50642.00 14.80 59.45 100.0 RNY4-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 6206.00 1.81 7.29 100.0 RNY4-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 2911.00 0.85 3.42 100.0 RNY4-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 3504.00 1.02 4.11 50.8 RNY4-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 528.00 0.15 0.62 100.0 RNY4-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 1650.00 0.48 1.94 100.0 RNY4-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 114595.00 33.49 134.53 97.31 RNY4-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 23250.00 6.79 27.30 92.57 RNY4-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 955.00 0.28 1.12 100.0 RNY4-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 18482.00 5.40 21.70 60.26 RNY4-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 23423.00 6.84 27.50 85.71 RNY4-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 16843.00 84.67 19.77 91.53 MIR3142HG-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 18820.00 87.00 22.09 100.0 SNHG6-204 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 11131.00 34.10 13.07 100.0 MIR151A-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 17335.00 53.11 20.35 83.48 MIR151A-201 miRNA smooth muscle cell (In vitro differentiated cells)