ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 86889.00 14.52 102.01 86.87 RPL13A-212 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 323.00 0.05 0.38 100.0 RPL13A-212 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 1093.00 0.18 1.28 100.0 RPL13A-212 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 2386.00 0.40 2.80 100.0 RPL13A-212 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 233.00 0.60 0.27 100.0 RPL7A-207 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 52.00 0.13 0.06 100.0 RPL7A-207 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 22610.00 57.77 26.54 66.6 RPL7A-207 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 6588.00 9.15 7.73 100.0 RN7SL2-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 968.00 1.34 1.14 14.4 RN7SL2-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 4761.00 3.12 5.59 98.92 NOP56-217 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 129292.00 84.70 151.79 89.69 NOP56-217 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 134734.00 15.63 158.18 93.63 RABGGTB-213 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 465.00 0.05 0.55 100.0 RABGGTB-213 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 633601.00 73.50 743.85 93.78 RABGGTB-213 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 445.00 0.05 0.52 48.69 RABGGTB-213 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 3610.00 0.42 4.24 100.0 RABGGTB-213 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 3.00 0.00 0.00 100.0 RABGGTB-213 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 6417.00 0.74 7.53 100.0 RABGGTB-213 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 469.00 0.05 0.55 51.31 RABGGTB-213 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 1259.00 3.73 1.48 100.0 GNL3-211 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 30798.00 91.29 36.16 100.0 GNL3-211 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 341.00 4.71 0.40 100.0 RPL5-205 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 5442.00 75.16 6.39 100.0 RPL5-205 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 9425.00 54.78 11.06 100.0 ZBED9-AS1-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 9779.00 88.62 11.48 100.0 RPS3A-206 retained intron smooth muscle cell (In vitro differentiated cells)