ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000388006.1 ENST00000388006.1_7_28_+ 7–28 50.00 28.25 0.06 100.0 MIR196A1-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000389680.2 ENST00000389680.2_316_354_+ 316–354 8084.00 53.35 9.49 100.0 MT-RNR1-201 Mt rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000389680.2 ENST00000389680.2_2_90_+ 2–90 479.00 3.16 0.56 100.0 MT-RNR1-201 Mt rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 131.00 60.09 0.15 100.0 MIR454-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 179.00 52.80 0.21 100.0 MIR501-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 1995.00 93.09 2.34 100.0 MIR769-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 184.00 75.72 0.22 100.0 KRTAP19-1-201 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 81.00 16.70 0.10 100.0 MIR708-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 340.00 81.73 0.40 100.0 MIR509-3-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000390751.3 ENST00000390751.3_47_68_+ 47–68 8.00 53.33 0.01 100.0 MIR543-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 969.00 95.75 1.14 100.0 MIR301B-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 389.00 52.93 0.46 78.74 RNU1-82P-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 2244.00 22.14 2.63 100.0 SNORD66-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 928.00 9.16 1.09 73.07 SNORD66-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 2943.00 29.04 3.46 100.0 SNORD66-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 340.00 3.35 0.40 100.0 SNORD66-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 465.00 70.78 0.55 100.0 U3.17-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 1342.00 27.94 1.58 100.0 SNORD17-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 3721.00 71.11 4.37 100.0 SNORD72-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 8253.00 82.87 9.69 100.0 SNORD70B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 16290.00 75.26 19.12 89.79 RNY4P18-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 69801.00 78.02 81.95 100.0 SNORD90-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 14673.00 16.40 17.23 64.64 SNORD90-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 945.00 0.68 1.11 100.0 SNORD69-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 420.00 0.30 0.49 100.0 SNORD69-201 snoRNA smooth muscle cell (In vitro differentiated cells)