sncRNA detail

ENST00000688371.3_458_485_+

Derived from ENST00000688371.3 • Homo Sapiens

20 libraries

sncRNA snapshot

Organism
Homo Sapiens
Precursor
MIR302CHG-205
Gene
MIR302CHG (ENSG00000249532.7)
Precursor type
lncRNA
Sequence
TAAACGTGGATGTACTTGCTTTGAAACT
Start
Start: 458
End
End: 485
Length
Length: 28
Expression (sum)
224742.00
Expression fraction
4.29
Expression (Avg non-zero)
11237.10
Expression (max)
98415.00
Expression (CPM sum)
5.68
Expression (CPM avg non-zero)
21.54
Expression (CPM max)
760.98
Prominence
100.0

Genomic Context

Precursor and gene context

Precursor overview

Transcript name
MIR302CHG-205
Transcript ID
ENST00000688371.3
Chromosome
chr4
Genomic start
112646715
Genomic end
112648700

Gene context

Gene name
MIR302CHG
Gene ID
ENSG00000249532.7
Gene type
lncRNA

Expression table

Showing 20 linked libraries
Library Biosample Expression Expression fraction Expression (CPM) Prominence
ENCFF001RLU spinal cord (Tissue) 1.00 7.14 0.00 100.00
ENCFF001RLY diencephalon (Tissue) 2.00 11.11 0.01 100.00
ENCFF001RLZ heart (Tissue) 4.00 0.88 0.00 100.00
ENCFF511CAA neuronal stem cell (In vitro differentiated cells) 140.00 0.07 1.08 100.00
ENCFF001RMK heart (Tissue) 4.00 1.05 0.01 100.00
ENCFF001RML cerebellum (Tissue) 1.00 4.17 0.00 100.00
ENCFF001RMS diencephalon (Tissue) 1.00 4.17 0.00 100.00
ENCFF004BLT GM23338 (Cell line) 26045.00 18.01 31.26 100.00
ENCFF193XIP neural progenitor cell (In vitro differentiated cells) 9438.00 22.96 7.78 100.00
ENCFF225QQQ mesenchymal stem cell (In vitro differentiated cells) 7.00 1.68 0.03 100.00
ENCFF276PUU mesenchymal stem cell (In vitro differentiated cells) 10.00 2.67 0.05 100.00
ENCFF316MTC trophoblast cell (In vitro differentiated cells) 56.00 0.02 0.36 100.00
ENCFF450POH GM23338 (Cell line) 98415.00 28.85 760.98 100.00
ENCFF503PBD mesendoderm (In vitro differentiated cells) 40062.00 2.35 379.84 100.00
ENCFF518LYU hepatocyte (In vitro differentiated cells) 2.00 1.05 0.00 100.00
ENCFF714LDG trophoblast cell (In vitro differentiated cells) 37.00 0.01 0.25 100.00
ENCFF720JFQ mesendoderm (In vitro differentiated cells) 41012.00 2.10 376.70 100.00
ENCFF936FXF neuronal stem cell (In vitro differentiated cells) 182.00 0.11 1.33 100.00
ENCFF964DUY hepatocyte (In vitro differentiated cells) 2.00 1.56 0.00 100.00
ENCFF994BMY neural progenitor cell (In vitro differentiated cells) 9321.00 24.53 5.66 100.00

RNA secondary structure