ENCFF261XRS

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR133GQJ
Description: Part of ENCODE experiment ENCSR133GQJ. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 11674.00 61.39 56.88 99.94 SNHG5-273 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 58.00 0.30 0.28 100.0 SNHG5-273 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 1337.00 7.03 6.51 100.0 SNHG5-273 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 420.00 2.21 2.05 100.0 SNHG5-273 lncRNA stomach (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 1438.00 0.63 7.01 61.66 MEG8-251 lncRNA stomach (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 219165.00 96.28 1067.84 99.1 MEG8-251 lncRNA stomach (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 1058.00 0.46 5.15 43.86 MEG8-251 lncRNA stomach (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 1787.00 0.79 8.71 95.15 MEG8-251 lncRNA stomach (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 13.00 0.01 0.06 100.0 MEG8-251 lncRNA stomach (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 372.00 31.23 1.81 100.0 FMN2-209 protein coding CDS not defined stomach (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 11.00 0.15 0.05 100.0 LINC02739-203 lncRNA stomach (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 31.00 0.43 0.15 19.62 LINC02739-203 lncRNA stomach (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 333.00 4.62 1.62 100.0 LINC02739-203 lncRNA stomach (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 1683.00 23.36 8.20 100.0 LINC02739-203 lncRNA stomach (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 409.00 5.68 1.99 100.0 LINC02739-203 lncRNA stomach (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 127.00 1.76 0.62 80.38 LINC02739-203 lncRNA stomach (Tissue)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 5.00 50.00 0.02 100.0 MIR124-1HG-216 lncRNA stomach (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 315.00 24.51 1.53 100.0 SNHG10-212 lncRNA stomach (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 3267.00 54.76 15.92 100.0 MIR222HG-206 lncRNA stomach (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 1526.00 25.58 7.44 74.58 MIR222HG-206 lncRNA stomach (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 36.00 0.60 0.18 100.0 MIR222HG-206 lncRNA stomach (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 2012.00 75.36 9.80 100.0 RPSA-216 retained intron stomach (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 1695.00 4.31 8.26 78.44 MIR99AHG-370 lncRNA stomach (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 36024.00 91.66 175.52 98.04 MIR99AHG-370 lncRNA stomach (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 117.00 92.13 0.57 100.0 HPS4-237 retained intron stomach (Tissue)