ENCFF261XRS

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR133GQJ
Description: Part of ENCODE experiment ENCSR133GQJ. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 4.00 66.67 0.02 100.0 MIR376C-201 miRNA stomach (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 655.00 57.01 3.19 100.0 SNHG21-206 retained intron stomach (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 57386.00 48.78 279.60 98.43 MIR486-1-201 miRNA stomach (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 14424.00 69.52 70.28 100.0 NOP56-219 retained intron stomach (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 104.00 0.50 0.51 100.0 NOP56-219 retained intron stomach (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 641.00 3.09 3.12 100.0 NOP56-219 retained intron stomach (Tissue)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 2175.00 10.48 10.60 52.11 NOP56-219 retained intron stomach (Tissue)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 3986.13 26.14 19.42 38.76 RNA5-8SN2-201 rRNA stomach (Tissue)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 18.00 0.12 0.09 100.0 RNA5-8SN2-201 rRNA stomach (Tissue)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 1715.00 11.25 8.36 100.0 RNA5-8SN2-201 rRNA stomach (Tissue)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 6.00 0.04 0.03 100.0 RNA5-8SN2-201 rRNA stomach (Tissue)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 5931.70 38.90 28.90 57.68 RNA5-8SN2-201 rRNA stomach (Tissue)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 9.00 75.00 0.04 100.0 MIR7974-201 miRNA stomach (Tissue)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 715.00 7.85 3.48 100.0 U2.3-201 snRNA stomach (Tissue)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 8.00 0.09 0.04 34.78 U2.3-201 snRNA stomach (Tissue)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 4.00 0.04 0.02 100.0 U2.3-201 snRNA stomach (Tissue)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 108.00 1.19 0.53 100.0 U2.3-201 snRNA stomach (Tissue)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 757.00 8.31 3.69 100.0 U2.3-201 snRNA stomach (Tissue)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 704.00 8.63 3.43 100.0 U2.6-201 snRNA stomach (Tissue)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 87.00 0.19 0.42 11.04 ENST00000619323 lncRNA stomach (Tissue)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 43217.00 96.59 210.57 97.77 ENST00000619323 lncRNA stomach (Tissue)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 255.00 22.06 1.24 100.0 SCARNA4-202 scaRNA stomach (Tissue)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 555.00 82.59 2.70 100.0 ENST00000625572 miRNA stomach (Tissue)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 879.00 86.60 4.28 100.0 ENST00000630615 snoRNA stomach (Tissue)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 135.00 41.16 0.66 100.0 DMRT2-209 protein coding stomach (Tissue)