ENCFF242SEA

Library Details

Organism: Homo Sapiens
Biosample: body of pancreas (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR033TKS
Description: Part of ENCODE experiment ENCSR033TKS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's pancreas tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000823279.1 ENST00000823279.1_151_169_+ 151–169 994.25 3.09 4.32 25.06 ENST00000823279 lncRNA body of pancreas (Tissue)
ENST00000823801.1 ENST00000823801.1_153_169_+ 153–169 3513.28 10.91 15.25 73.19 ENST00000823801 lncRNA body of pancreas (Tissue)
ENST00000827714.1 ENST00000827714.1_110_129_+ 110–129 323.00 71.62 1.40 85.45 ENST00000827714 lncRNA body of pancreas (Tissue)
ENST00000827714.1 ENST00000827714.1_110_131_+ 110–131 55.00 12.20 0.24 14.55 ENST00000827714 lncRNA body of pancreas (Tissue)
ENST00000828033.1 ENST00000828033.1_252_322_+ 252–322 13988.00 12.82 60.72 100.0 GAS5-377 lncRNA body of pancreas (Tissue)
ENST00000828033.1 ENST00000828033.1_290_318_+ 290–318 5176.00 4.74 22.47 100.0 GAS5-377 lncRNA body of pancreas (Tissue)
ENST00000828033.1 ENST00000828033.1_252_318_+ 252–318 84681.00 77.62 367.58 100.0 GAS5-377 lncRNA body of pancreas (Tissue)
ENST00000836993.1 ENST00000836993.1_387_463_+ 387–463 32841.00 90.36 142.56 99.26 ZFAS1-238 lncRNA body of pancreas (Tissue)
ENST00000836993.1 ENST00000836993.1_422_463_+ 422–463 40.00 0.11 0.17 100.0 ZFAS1-238 lncRNA body of pancreas (Tissue)
ENST00000836993.1 ENST00000836993.1_402_463_+ 402–463 83.00 0.23 0.36 100.0 ZFAS1-238 lncRNA body of pancreas (Tissue)
ENST00000836993.1 ENST00000836993.1_410_463_+ 410–463 991.00 2.73 4.30 100.0 ZFAS1-238 lncRNA body of pancreas (Tissue)
ENST00000836997.1 ENST00000836997.1_305_352_+ 305–352 5138.00 75.49 22.30 100.0 ZFAS1-242 lncRNA body of pancreas (Tissue)
ENST00000836997.1 ENST00000836997.1_305_380_+ 305–380 1312.00 19.28 5.70 100.0 ZFAS1-242 lncRNA body of pancreas (Tissue)
ENST00000837997.1 ENST00000837997.1_211_224_+ 211–224 3813.00 37.18 16.55 100.0 ENST00000837997 lncRNA body of pancreas (Tissue)
ENST00000837997.1 ENST00000837997.1_214_225_+ 214–225 3303.00 32.21 14.34 100.0 ENST00000837997 lncRNA body of pancreas (Tissue)
ENST00000839036.1 ENST00000839036.1_40_61_+ 40–61 16076.00 62.46 69.78 69.18 ENST00000839036 lncRNA body of pancreas (Tissue)
ENST00000849527.1 ENST00000849527.1_293_307_+ 293–307 812.00 13.27 3.52 100.0 ENST00000849527 lncRNA body of pancreas (Tissue)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_3_32_+ 3–32 11347.00 61.69 49.26 93.87 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA body of pancreas (Tissue)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_2_52_+ 2–52 93.00 0.51 0.40 100.0 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA body of pancreas (Tissue)
TRNA-TRANSCRIPT-CHR1-121020729 tRNA-transcript-chr1-121020729_1_54_+ 1–54 712.00 0.87 3.09 100.0 TRNA-TRANSCRIPT-CHR1-121020729 Val tRNA body of pancreas (Tissue)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_23_+ 1–23 6784.00 66.61 29.45 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA body of pancreas (Tissue)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_33_+ 1–33 140.00 1.37 0.61 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA body of pancreas (Tissue)
TRNA-TRANSCRIPT-CHR1-146037061 tRNA-transcript-chr1-146037061_1_53_+ 1–53 83.00 4.59 0.36 100.0 TRNA-TRANSCRIPT-CHR1-146037061 Gly tRNA body of pancreas (Tissue)
TRNA-TRANSCRIPT-CHR1-148032790 tRNA-transcript-chr1-148032790_1_53_+ 1–53 739.00 2.59 3.21 100.0 TRNA-TRANSCRIPT-CHR1-148032790 Gln tRNA body of pancreas (Tissue)
TRNA-TRANSCRIPT-CHR1-149692805 tRNA-transcript-chr1-149692805_4_33_+ 4–33 954.00 33.67 4.14 76.75 TRNA-TRANSCRIPT-CHR1-149692805 Pseudo tRNA body of pancreas (Tissue)