ENCFF242SEA

Library Details

Organism: Homo Sapiens
Biosample: body of pancreas (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR033TKS
Description: Part of ENCODE experiment ENCSR033TKS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's pancreas tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 202096.00 8.24 877.26 90.51 RPL23A-208 retained intron body of pancreas (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 5337.00 12.11 23.17 88.26 RPL17-211 retained intron body of pancreas (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 6765.00 15.35 29.37 50.9 RPL17-211 retained intron body of pancreas (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 346.00 0.79 1.50 100.0 RPL17-211 retained intron body of pancreas (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 26827.00 60.88 116.45 96.74 RPL17-211 retained intron body of pancreas (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 3200.00 7.26 13.89 97.35 RPL17-211 retained intron body of pancreas (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 11296.00 28.62 49.03 100.0 RPL17-214 retained intron body of pancreas (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 16443.71 41.67 71.38 63.31 RPL17-214 retained intron body of pancreas (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 10305.92 26.11 44.74 38.14 RPL17-214 retained intron body of pancreas (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 130.00 0.02 0.56 100.0 SNORD43-201 snoRNA body of pancreas (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 581855.00 98.52 2525.72 99.87 SNORD43-201 snoRNA body of pancreas (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 51.00 15.18 0.22 100.0 MIR151B-201 miRNA body of pancreas (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 214.00 1.53 0.93 100.0 SNORD3A-201 snoRNA body of pancreas (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 9153.00 74.32 39.73 100.0 SNORD92-201 snoRNA body of pancreas (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 2783.00 11.25 12.08 100.0 NSRP1-214 protein coding body of pancreas (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 16461.00 66.53 71.45 82.0 NSRP1-214 protein coding body of pancreas (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 600.00 8.93 2.60 100.0 MIR23AHG-201 lncRNA body of pancreas (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 1093.00 16.26 4.74 100.0 MIR23AHG-201 lncRNA body of pancreas (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 1488.00 22.14 6.46 79.83 MIR23AHG-201 lncRNA body of pancreas (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 1563.00 23.25 6.78 99.05 MIR23AHG-201 lncRNA body of pancreas (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 153.00 2.28 0.66 66.81 MIR23AHG-201 lncRNA body of pancreas (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 265.00 31.97 1.15 100.0 ODAD3-204 nonsense mediated decay body of pancreas (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 2241.00 5.73 9.73 100.0 VMP1-217 retained intron body of pancreas (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 220.00 0.56 0.95 100.0 VMP1-217 retained intron body of pancreas (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 19708.00 50.39 85.55 60.82 VMP1-217 retained intron body of pancreas (Tissue)