ENCFF242SEA

Library Details

Organism: Homo Sapiens
Biosample: body of pancreas (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR033TKS
Description: Part of ENCODE experiment ENCSR033TKS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's pancreas tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 1567.00 7.79 6.80 100.0 RN7SL2-201 misc RNA body of pancreas (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 1662.00 8.26 7.21 25.2 RN7SL2-201 misc RNA body of pancreas (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 326.00 83.38 1.42 100.0 RGS11-208 retained intron body of pancreas (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 6408.00 8.28 27.82 90.32 NOP56-217 protein coding CDS not defined body of pancreas (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 48809.00 63.04 211.87 72.8 NOP56-217 protein coding CDS not defined body of pancreas (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 2749.00 1.03 11.93 100.0 RABGGTB-213 protein coding CDS not defined body of pancreas (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 1214.00 0.46 5.27 62.58 RABGGTB-213 protein coding CDS not defined body of pancreas (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 726.00 0.27 3.15 37.42 RABGGTB-213 protein coding CDS not defined body of pancreas (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 221658.00 83.12 962.17 91.24 RABGGTB-213 protein coding CDS not defined body of pancreas (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 2997.00 1.12 13.01 85.58 RABGGTB-213 protein coding CDS not defined body of pancreas (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 467.00 0.18 2.03 100.0 RABGGTB-213 protein coding CDS not defined body of pancreas (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 2814.00 1.06 12.22 100.0 RABGGTB-213 protein coding CDS not defined body of pancreas (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 5028.00 71.76 21.83 100.0 GNL3-211 retained intron body of pancreas (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 1279.00 18.25 5.55 100.0 GNL3-211 retained intron body of pancreas (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 1757.00 56.79 7.63 100.0 RPL5-205 retained intron body of pancreas (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 491.00 15.87 2.13 100.0 RPL5-205 retained intron body of pancreas (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 165.00 0.67 0.72 100.0 ZBED9-AS1-201 lncRNA body of pancreas (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 2584.00 90.79 11.22 100.0 RPS3A-206 retained intron body of pancreas (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 21091.00 95.00 91.55 100.0 COX7C-203 protein coding body of pancreas (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 17721.52 8.13 76.93 22.47 RACK1-229 protein coding body of pancreas (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 111170.73 50.97 482.57 86.68 RACK1-229 protein coding body of pancreas (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 65036.00 29.82 282.31 99.83 RACK1-229 protein coding body of pancreas (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 9401.00 4.31 40.81 100.0 RACK1-229 protein coding body of pancreas (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 204331.00 74.83 886.96 91.2 RACK1-230 retained intron body of pancreas (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 62832.00 23.01 272.74 57.64 RACK1-230 retained intron body of pancreas (Tissue)