ENCFF242SEA

Library Details

Organism: Homo Sapiens
Biosample: body of pancreas (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR033TKS
Description: Part of ENCODE experiment ENCSR033TKS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's pancreas tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 1875.00 0.37 8.14 48.55 EIF4A2-219 retained intron body of pancreas (Tissue)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 978.00 0.19 4.25 100.0 EIF4A2-219 retained intron body of pancreas (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 22423.00 4.41 97.33 58.47 EIF4A2-219 retained intron body of pancreas (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 371.00 0.07 1.61 24.78 EIF4A2-219 retained intron body of pancreas (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 3836.00 0.75 16.65 42.5 EIF4A2-219 retained intron body of pancreas (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 175.00 0.03 0.76 34.52 EIF4A2-219 retained intron body of pancreas (Tissue)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 2043.00 0.40 8.87 100.0 EIF4A2-219 retained intron body of pancreas (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 29408.00 97.19 127.65 100.0 RPS8-207 protein coding CDS not defined body of pancreas (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 377.00 28.09 1.64 100.0 RPL7A-206 protein coding CDS not defined body of pancreas (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 566.00 42.18 2.46 100.0 RPL7A-206 protein coding CDS not defined body of pancreas (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 141.00 10.51 0.61 100.0 RPL7A-206 protein coding CDS not defined body of pancreas (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 624974.00 55.00 2712.89 99.68 RPL21-209 retained intron body of pancreas (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 1037.00 0.09 4.50 100.0 RPL21-209 retained intron body of pancreas (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 485756.00 42.75 2108.57 96.05 RPL21-209 retained intron body of pancreas (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 46.00 0.00 0.20 100.0 RPL21-209 retained intron body of pancreas (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 15097.00 1.33 65.53 100.0 RPL21-209 retained intron body of pancreas (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 17.00 22.97 0.07 100.0 GABRE-209 retained intron body of pancreas (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 72968.00 70.23 316.74 98.9 RPL13A-212 retained intron body of pancreas (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 6332.00 6.09 27.49 80.67 RPL13A-212 retained intron body of pancreas (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 71.00 0.07 0.31 100.0 RPL13A-212 retained intron body of pancreas (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 1.00 0.00 0.00 100.0 RPL13A-212 retained intron body of pancreas (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 1226.00 1.18 5.32 100.0 RPL13A-212 retained intron body of pancreas (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 2908.00 23.85 12.62 67.08 RPL7A-207 protein coding CDS not defined body of pancreas (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 386.00 3.17 1.68 100.0 RPL7A-207 protein coding CDS not defined body of pancreas (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 2103.00 17.25 9.13 100.0 RPL7A-207 protein coding CDS not defined body of pancreas (Tissue)