ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000364915.1 ENST00000364915.1_1_76_+ 1–76 681.00 20.20 4.50 43.24 SNORD117-201 snoRNA Karpas-422 (Cell line)
ENST00000364991.1 ENST00000364991.1_17_30_+ 17–30 36.00 0.21 0.24 100.0 RNA5SP298-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000365073.1 ENST00000365073.1_2_81_+ 2–81 4.00 13.33 0.03 100.0 SNORD115-10-201 snoRNA Karpas-422 (Cell line)
ENST00000365099.1 ENST00000365099.1_2_82_+ 2–82 1.00 25.00 0.01 100.0 SNORD115-20-201 snoRNA Karpas-422 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_68_+ 1–68 38166.00 89.10 251.94 100.0 SNORD38A-201 snoRNA Karpas-422 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_38_+ 1–38 1829.00 4.27 12.07 100.0 SNORD38A-201 snoRNA Karpas-422 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_41_+ 1–41 328.00 0.77 2.17 100.0 SNORD38A-201 snoRNA Karpas-422 (Cell line)
ENST00000365328.1 ENST00000365328.1_277_331_+ 277–331 162977.00 25.24 1075.84 86.97 7SK.1-201 misc RNA Karpas-422 (Cell line)
ENST00000365328.1 ENST00000365328.1_1_76_+ 1–76 8888.00 1.38 58.67 100.0 7SK.1-201 misc RNA Karpas-422 (Cell line)
ENST00000365328.1 ENST00000365328.1_270_331_+ 270–331 6583.00 1.02 43.46 51.05 7SK.1-201 misc RNA Karpas-422 (Cell line)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 11184.00 1.73 73.83 100.0 7SK.1-201 misc RNA Karpas-422 (Cell line)
ENST00000365328.1 ENST00000365328.1_273_331_+ 273–331 18104.00 2.80 119.51 42.58 7SK.1-201 misc RNA Karpas-422 (Cell line)
ENST00000365328.1 ENST00000365328.1_260_331_+ 260–331 14763.00 2.29 97.45 100.0 7SK.1-201 misc RNA Karpas-422 (Cell line)
ENST00000365328.1 ENST00000365328.1_1_63_+ 1–63 28383.00 4.40 187.36 98.96 7SK.1-201 misc RNA Karpas-422 (Cell line)
ENST00000365328.1 ENST00000365328.1_282_331_+ 282–331 132.00 0.02 0.87 100.0 7SK.1-201 misc RNA Karpas-422 (Cell line)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 2237.00 0.35 14.77 100.0 7SK.1-201 misc RNA Karpas-422 (Cell line)
ENST00000365382.1 ENST00000365382.1_1_88_+ 1–88 17.00 5.76 0.11 100.0 SNORD14C-201 snoRNA Karpas-422 (Cell line)
ENST00000365391.1 ENST00000365391.1_2_82_+ 2–82 10.00 30.30 0.07 100.0 SNORD115-44-201 snoRNA Karpas-422 (Cell line)
ENST00000365394.1 ENST00000365394.1_85_96_+ 85–96 403.00 24.47 2.66 100.0 RNA5SP77-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000365444.1 ENST00000365444.1_3_69_+ 3–69 93857.00 87.11 619.57 100.0 SNORD6-201 snoRNA Karpas-422 (Cell line)
ENST00000365444.1 ENST00000365444.1_30_69_+ 30–69 2280.00 2.12 15.05 100.0 SNORD6-201 snoRNA Karpas-422 (Cell line)
ENST00000365484.1 ENST00000365484.1_1_95_+ 1–95 207.00 4.22 1.37 100.0 RNY3-201 misc RNA Karpas-422 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 1732.00 7.65 11.43 100.0 SNORD82-201 snoRNA Karpas-422 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 1415.00 6.25 9.34 100.0 SNORD82-201 snoRNA Karpas-422 (Cell line)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 2769.00 12.24 18.28 94.44 SNORD82-201 snoRNA Karpas-422 (Cell line)