ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000363341.1 ENST00000363341.1_1_32_+ 1–32 1600.00 30.09 10.56 97.21 RNY4P27-201 misc RNA Karpas-422 (Cell line)
ENST00000363444.1 ENST00000363444.1_74_99_+ 74–99 392.00 12.42 2.59 100.0 Y_RNA.136-201 misc RNA Karpas-422 (Cell line)
ENST00000363608.1 ENST00000363608.1_2_82_+ 2–82 3.00 10.34 0.02 100.0 SNORD115-41-201 snoRNA Karpas-422 (Cell line)
ENST00000363872.1 ENST00000363872.1_74_98_+ 74–98 179.00 20.55 1.18 100.0 Y_RNA.181-201 misc RNA Karpas-422 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_39_+ 1–39 274.00 0.55 1.81 100.0 RNY1-201 misc RNA Karpas-422 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_32_+ 1–32 8451.32 17.10 55.79 46.62 RNY1-201 misc RNA Karpas-422 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_30_+ 1–30 9209.43 18.64 60.79 56.79 RNY1-201 misc RNA Karpas-422 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_63_+ 1–63 3646.00 7.38 24.07 100.0 RNY1-201 misc RNA Karpas-422 (Cell line)
ENST00000364228.1 ENST00000364228.1_24_109_+ 24–109 330.00 0.67 2.18 100.0 RNY1-201 misc RNA Karpas-422 (Cell line)
ENST00000364315.1 ENST00000364315.1_101_119_+ 101–119 1720.62 1.72 11.36 11.18 RNA5SP202-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000364315.1 ENST00000364315.1_83_119_+ 83–119 3954.00 3.95 26.10 100.0 RNA5SP202-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000364315.1 ENST00000364315.1_37_95_+ 37–95 2895.25 2.89 19.11 30.78 RNA5SP202-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000364315.1 ENST00000364315.1_52_119_+ 52–119 1931.00 1.93 12.75 100.0 RNA5SP202-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000364315.1 ENST00000364315.1_71_95_+ 71–95 652.00 0.65 4.30 100.0 RNA5SP202-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000364315.1 ENST00000364315.1_62_119_+ 62–119 3544.00 3.54 23.39 100.0 RNA5SP202-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000364315.1 ENST00000364315.1_35_95_+ 35–95 6168.02 6.17 40.72 63.19 RNA5SP202-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000364315.1 ENST00000364315.1_71_119_+ 71–119 584.00 0.58 3.86 100.0 RNA5SP202-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000364315.1 ENST00000364315.1_87_119_+ 87–119 332.00 0.33 2.19 100.0 RNA5SP202-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000364409.1 ENST00000364409.1_68_90_+ 68–90 28774.00 60.94 189.94 100.0 Y_RNA.234-201 misc RNA Karpas-422 (Cell line)
ENST00000364451.1 ENST00000364451.1_1_95_+ 1–95 127.00 0.05 0.84 100.0 RNA5S9-201 rRNA Karpas-422 (Cell line)
ENST00000364543.1 ENST00000364543.1_1_39_+ 1–39 4620.00 2.42 30.50 100.0 RNA5SP141-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000364722.1 ENST00000364722.1_2_30_+ 2–30 5253.00 70.94 34.68 100.0 ENST00000364722 snoRNA Karpas-422 (Cell line)
ENST00000364809.1 ENST00000364809.1_2_81_+ 2–81 2.00 7.14 0.01 100.0 SNORD115-15-201 snoRNA Karpas-422 (Cell line)
ENST00000364884.1 ENST00000364884.1_1_66_+ 1–66 5657.00 64.20 37.34 100.0 SNORD52-201 snoRNA Karpas-422 (Cell line)
ENST00000364915.1 ENST00000364915.1_1_76_+ 1–76 681.00 20.20 4.50 43.24 SNORD117-201 snoRNA Karpas-422 (Cell line)