ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 9348.00 11.32 61.71 79.69 RNU5A-1-201 snRNA Karpas-422 (Cell line)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 1692.00 2.05 11.17 49.82 RNU5A-1-201 snRNA Karpas-422 (Cell line)
ENST00000362698.1 ENST00000362698.1_36_116_+ 36–116 2658.00 3.22 17.55 70.96 RNU5A-1-201 snRNA Karpas-422 (Cell line)
ENST00000362698.1 ENST00000362698.1_63_116_+ 63–116 983.00 1.19 6.49 37.23 RNU5A-1-201 snRNA Karpas-422 (Cell line)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 1100.29 1.33 7.26 45.88 RNU5A-1-201 snRNA Karpas-422 (Cell line)
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 1562.00 1.89 10.31 32.71 RNU5A-1-201 snRNA Karpas-422 (Cell line)
ENST00000362698.1 ENST00000362698.1_1_78_+ 1–78 114.00 0.14 0.75 100.0 RNU5A-1-201 snRNA Karpas-422 (Cell line)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 5370.98 6.51 35.45 77.05 RNU5A-1-201 snRNA Karpas-422 (Cell line)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 1298.66 1.57 8.57 44.74 RNU5A-1-201 snRNA Karpas-422 (Cell line)
ENST00000362698.1 ENST00000362698.1_72_116_+ 72–116 1790.00 2.17 11.82 100.0 RNU5A-1-201 snRNA Karpas-422 (Cell line)
ENST00000362883.1 ENST00000362883.1_35_70_+ 35–70 152.00 6.98 1.00 100.0 SNORD104-201 snoRNA Karpas-422 (Cell line)
ENST00000362883.1 ENST00000362883.1_10_70_+ 10–70 36.00 1.65 0.24 100.0 SNORD104-201 snoRNA Karpas-422 (Cell line)
ENST00000362912.1 ENST00000362912.1_2_82_+ 2–82 11.00 28.95 0.07 100.0 SNORD115-9-201 snoRNA Karpas-422 (Cell line)
ENST00000362973.1 ENST00000362973.1_96_117_+ 96–117 4275.00 17.86 28.22 84.4 RNA5SP358-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000363124.1 ENST00000363124.1_17_32_+ 17–32 266.00 0.10 1.76 88.08 RNA5SP145-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000363182.1 ENST00000363182.1_1_32_+ 1–32 8.00 1.64 0.05 100.0 Y_RNA.105-201 misc RNA Karpas-422 (Cell line)
ENST00000363194.1 ENST00000363194.1_1_32_+ 1–32 445.00 19.58 2.94 100.0 RNY4P9-201 misc RNA Karpas-422 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_78_+ 1–78 196.00 0.79 1.29 17.69 RNU5B-1-201 snRNA Karpas-422 (Cell line)
ENST00000363286.1 ENST00000363286.1_68_116_+ 68–116 365.00 1.47 2.41 100.0 RNU5B-1-201 snRNA Karpas-422 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_69_+ 1–69 6967.00 28.02 45.99 100.0 RNU5B-1-201 snRNA Karpas-422 (Cell line)
ENST00000363286.1 ENST00000363286.1_63_116_+ 63–116 272.00 1.09 1.80 100.0 RNU5B-1-201 snRNA Karpas-422 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_86_+ 1–86 305.00 1.23 2.01 100.0 RNU5B-1-201 snRNA Karpas-422 (Cell line)
ENST00000363286.1 ENST00000363286.1_55_116_+ 55–116 1649.00 6.63 10.89 100.0 RNU5B-1-201 snRNA Karpas-422 (Cell line)
ENST00000363293.1 ENST00000363293.1_2_82_+ 2–82 214.00 96.40 1.41 99.07 SNORD115-18-201 snoRNA Karpas-422 (Cell line)
ENST00000363341.1 ENST00000363341.1_1_36_+ 1–36 60.00 1.13 0.40 56.6 RNY4P27-201 misc RNA Karpas-422 (Cell line)