ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR1-161448951 tRNA-transcript-chr1-161448951_1_26_+ 1–26 1153.00 35.72 7.61 100.0 TRNA-TRANSCRIPT-CHR1-161448951 Leu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_4_33_+ 4–33 10577.00 5.56 69.82 41.97 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_1_53_+ 1–53 8728.00 4.59 57.62 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_14_49_+ 14–49 1289.00 0.68 8.51 90.71 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_21_34_+ 21–34 46.00 0.02 0.30 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_16_42_+ 16–42 300.00 0.16 1.98 82.19 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_1_72_+ 1–72 31010.00 16.32 204.70 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_21_49_+ 21–49 122.00 0.06 0.81 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-161480566 tRNA-transcript-chr1-161480566_1_32_+ 1–32 40.00 4.83 0.26 100.0 TRNA-TRANSCRIPT-CHR1-161480566 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-16545939 tRNA-transcript-chr1-16545939_1_52_+ 1–52 302.00 0.13 1.99 97.11 TRNA-TRANSCRIPT-CHR1-16545939 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-16678271 tRNA-transcript-chr1-16678271_1_32_+ 1–32 1839.00 70.70 12.14 100.0 TRNA-TRANSCRIPT-CHR1-16678271 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-16678271 tRNA-transcript-chr1-16678271_14_32_+ 14–32 32.00 1.23 0.21 100.0 TRNA-TRANSCRIPT-CHR1-16678271 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-16727285 tRNA-transcript-chr1-16727285_2_32_+ 2–32 348.00 24.13 2.30 100.0 TRNA-TRANSCRIPT-CHR1-16727285 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-167715488 tRNA-transcript-chr1-167715488_8_31_+ 8–31 389.00 5.42 2.57 100.0 TRNA-TRANSCRIPT-CHR1-167715488 Pro tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-16861921 tRNA-transcript-chr1-16861921_18_53_+ 18–53 17.00 0.01 0.11 100.0 TRNA-TRANSCRIPT-CHR1-16861921 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-16861921 tRNA-transcript-chr1-16861921_1_35_+ 1–35 937.00 0.39 6.19 17.63 TRNA-TRANSCRIPT-CHR1-16861921 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR11-76235825 tRNA-transcript-chr11-76235825_3_32_+ 3–32 44.00 1.40 0.29 9.73 TRNA-TRANSCRIPT-CHR11-76235825 Pro tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR11-76235825 tRNA-transcript-chr11-76235825_1_32_+ 1–32 408.00 12.97 2.69 93.36 TRNA-TRANSCRIPT-CHR11-76235825 Pro tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR12-124939966 tRNA-transcript-chr12-124939966_1_53_+ 1–53 505.00 18.41 3.33 100.0 TRNA-TRANSCRIPT-CHR12-124939966 Ala tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-248874248 tRNA-transcript-chr1-248874248_1_39_+ 1–39 31910.00 21.33 210.64 100.0 TRNA-TRANSCRIPT-CHR1-248874248 Glu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-248874248 tRNA-transcript-chr1-248874248_1_33_+ 1–33 48101.00 32.15 317.52 75.23 TRNA-TRANSCRIPT-CHR1-248874248 Glu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR12-98503503 tRNA-transcript-chr12-98503503_1_33_+ 1–33 58.00 5.13 0.38 100.0 TRNA-TRANSCRIPT-CHR12-98503503 Asp tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-54957869 tRNA-transcript-chr1-54957869_16_32_+ 16–32 62.00 4.87 0.41 100.0 TRNA-TRANSCRIPT-CHR1-54957869 Lys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR15-65869062 tRNA-transcript-chr15-65869062_8_33_+ 8–33 45.00 0.16 0.30 100.0 TRNA-TRANSCRIPT-CHR15-65869062 Gln tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_55_+ 1–55 7292.00 14.08 48.14 86.5 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA Karpas-422 (Cell line)