ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000762395.1 ENST00000762395.1_307_324_+ 307–324 1.00 0.00 0.01 100.0 LINC02806-241 lncRNA Karpas-422 (Cell line)
ENST00000766977.1 ENST00000766977.1_604_615_+ 604–615 534.00 73.45 3.53 100.0 EHBP1-AS1-210 lncRNA Karpas-422 (Cell line)
ENST00000770398.1 ENST00000770398.1_425_437_+ 425–437 46.00 4.52 0.30 100.0 ENST00000770398 lncRNA Karpas-422 (Cell line)
ENST00000770398.1 ENST00000770398.1_481_509_+ 481–509 308.00 30.26 2.03 100.0 ENST00000770398 lncRNA Karpas-422 (Cell line)
ENST00000770398.1 ENST00000770398.1_425_456_+ 425–456 12.00 1.18 0.08 100.0 ENST00000770398 lncRNA Karpas-422 (Cell line)
ENST00000771298.1 ENST00000771298.1_1591_1611_+ 1591–1611 129.00 1.66 0.85 100.0 ENST00000771298 lncRNA Karpas-422 (Cell line)
ENST00000771298.1 ENST00000771298.1_448_479_+ 448–479 12.00 0.15 0.08 100.0 ENST00000771298 lncRNA Karpas-422 (Cell line)
ENST00000771298.1 ENST00000771298.1_1591_1621_+ 1591–1621 3978.00 51.12 26.26 82.04 ENST00000771298 lncRNA Karpas-422 (Cell line)
ENST00000771298.1 ENST00000771298.1_485_522_+ 485–522 97.00 1.25 0.64 100.0 ENST00000771298 lncRNA Karpas-422 (Cell line)
ENST00000772672.1 ENST00000772672.1_26_113_+ 26–113 1297.00 40.20 8.56 100.0 ENST00000772672 lncRNA Karpas-422 (Cell line)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 2.00 0.06 0.01 100.0 ENST00000772672 lncRNA Karpas-422 (Cell line)
ENST00000772672.1 ENST00000772672.1_91_113_+ 91–113 166.00 5.15 1.10 100.0 ENST00000772672 lncRNA Karpas-422 (Cell line)
ENST00000773843.1 ENST00000773843.1_422_435_+ 422–435 316.00 25.63 2.09 100.0 ENST00000773843 lncRNA Karpas-422 (Cell line)
ENST00000775062.1 ENST00000775062.1_1327_1402_+ 1327–1402 378.00 0.05 2.50 100.0 SNHG12-223 lncRNA Karpas-422 (Cell line)
ENST00000775062.1 ENST00000775062.1_1328_1392_+ 1328–1392 194815.00 27.27 1286.01 84.94 SNHG12-223 lncRNA Karpas-422 (Cell line)
ENST00000775062.1 ENST00000775062.1_1328_1395_+ 1328–1395 515229.00 72.13 3401.13 98.76 SNHG12-223 lncRNA Karpas-422 (Cell line)
ENST00000776279.1 ENST00000776279.1_205_232_+ 205–232 1156.00 0.08 7.63 100.0 SNHG25-206 lncRNA Karpas-422 (Cell line)
ENST00000776279.1 ENST00000776279.1_161_234_+ 161–234 1276282.00 93.06 8425.00 94.12 SNHG25-206 lncRNA Karpas-422 (Cell line)
ENST00000776279.1 ENST00000776279.1_161_206_+ 161–206 82.00 0.01 0.54 100.0 SNHG25-206 lncRNA Karpas-422 (Cell line)
ENST00000776279.1 ENST00000776279.1_176_234_+ 176–234 169.69 0.01 1.12 52.05 SNHG25-206 lncRNA Karpas-422 (Cell line)
ENST00000776279.1 ENST00000776279.1_172_234_+ 172–234 348.26 0.03 2.30 64.97 SNHG25-206 lncRNA Karpas-422 (Cell line)
ENST00000776279.1 ENST00000776279.1_174_234_+ 174–234 239.99 0.02 1.58 31.21 SNHG25-206 lncRNA Karpas-422 (Cell line)
ENST00000776279.1 ENST00000776279.1_196_234_+ 196–234 4765.00 0.35 31.45 96.91 SNHG25-206 lncRNA Karpas-422 (Cell line)
ENST00000776279.1 ENST00000776279.1_184_234_+ 184–234 235.00 0.02 1.55 100.0 SNHG25-206 lncRNA Karpas-422 (Cell line)
ENST00000779378.1 ENST00000779378.1_905_928_+ 905–928 328.00 90.11 2.17 94.8 MIR155HG-205 lncRNA Karpas-422 (Cell line)