ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000747675.1 ENST00000747675.1_804_853_+ 804–853 265.00 2.06 1.75 41.47 ENST00000747675 lncRNA Karpas-422 (Cell line)
ENST00000747675.1 ENST00000747675.1_812_853_+ 812–853 6428.00 50.00 42.43 100.0 ENST00000747675 lncRNA Karpas-422 (Cell line)
ENST00000748458.1 ENST00000748458.1_161_188_+ 161–188 32592.00 49.96 215.15 81.53 SNHG26-250 lncRNA Karpas-422 (Cell line)
ENST00000748458.1 ENST00000748458.1_161_230_+ 161–230 442.00 0.68 2.92 11.11 SNHG26-250 lncRNA Karpas-422 (Cell line)
ENST00000752259.1 ENST00000752259.1_405_425_+ 405–425 182.00 7.39 1.20 100.0 LINC02422-207 lncRNA Karpas-422 (Cell line)
ENST00000753088.1 ENST00000753088.1_508_523_+ 508–523 148.00 4.47 0.98 100.0 ENST00000753088 lncRNA Karpas-422 (Cell line)
ENST00000753088.1 ENST00000753088.1_508_542_+ 508–542 46.00 1.39 0.30 100.0 ENST00000753088 lncRNA Karpas-422 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_127_+ 98–127 758.69 3.98 5.01 61.58 ENST00000756336 lncRNA Karpas-422 (Cell line)
ENST00000756336.1 ENST00000756336.1_133_172_+ 133–172 912.00 4.79 6.02 100.0 ENST00000756336 lncRNA Karpas-422 (Cell line)
ENST00000756336.1 ENST00000756336.1_117_172_+ 117–172 1227.00 6.44 8.10 100.0 ENST00000756336 lncRNA Karpas-422 (Cell line)
ENST00000756336.1 ENST00000756336.1_137_172_+ 137–172 345.00 1.81 2.28 100.0 ENST00000756336 lncRNA Karpas-422 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_132_+ 98–132 313.42 1.65 2.07 17.11 ENST00000756336 lncRNA Karpas-422 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_130_+ 98–130 1807.45 9.49 11.93 87.36 ENST00000756336 lncRNA Karpas-422 (Cell line)
ENST00000756336.1 ENST00000756336.1_107_172_+ 107–172 534.27 2.81 3.53 29.58 ENST00000756336 lncRNA Karpas-422 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_125_+ 98–125 369.49 1.94 2.44 41.28 ENST00000756336 lncRNA Karpas-422 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_172_+ 98–172 4993.00 26.23 32.96 100.0 ENST00000756336 lncRNA Karpas-422 (Cell line)
ENST00000756336.1 ENST00000756336.1_109_172_+ 109–172 2043.26 10.73 13.49 79.63 ENST00000756336 lncRNA Karpas-422 (Cell line)
ENST00000756452.1 ENST00000756452.1_116_129_+ 116–129 329.00 93.47 2.17 100.0 ENST00000756452 lncRNA Karpas-422 (Cell line)
ENST00000760093.1 ENST00000760093.1_80_108_+ 80–108 317.00 19.06 2.09 100.0 ENST00000760093 lncRNA Karpas-422 (Cell line)
ENST00000760093.1 ENST00000760093.1_77_108_+ 77–108 22.00 1.32 0.15 100.0 ENST00000760093 lncRNA Karpas-422 (Cell line)
ENST00000760397.1 ENST00000760397.1_331_421_+ 331–421 2013.00 55.62 13.29 93.54 SNHG14-356 lncRNA Karpas-422 (Cell line)
ENST00000762395.1 ENST00000762395.1_325_354_+ 325–354 11418.00 36.74 75.37 74.97 LINC02806-241 lncRNA Karpas-422 (Cell line)
ENST00000762395.1 ENST00000762395.1_325_377_+ 325–377 804.00 2.59 5.31 100.0 LINC02806-241 lncRNA Karpas-422 (Cell line)
ENST00000762395.1 ENST00000762395.1_397_430_+ 397–430 3.00 0.01 0.02 100.0 LINC02806-241 lncRNA Karpas-422 (Cell line)
ENST00000762395.1 ENST00000762395.1_324_357_+ 324–357 4736.00 15.24 31.26 61.05 LINC02806-241 lncRNA Karpas-422 (Cell line)