ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 1789.00 1.39 11.81 100.0 MIR17HG-214 lncRNA Karpas-422 (Cell line)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 11770.00 1.81 77.70 100.0 SNHG32-223 lncRNA Karpas-422 (Cell line)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 666.00 0.10 4.40 100.0 SNHG32-223 lncRNA Karpas-422 (Cell line)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 418.00 0.06 2.76 100.0 SNHG32-223 lncRNA Karpas-422 (Cell line)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 7126.00 1.10 47.04 89.12 SNHG32-223 lncRNA Karpas-422 (Cell line)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 625613.00 96.14 4129.80 100.0 SNHG32-223 lncRNA Karpas-422 (Cell line)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 52695.00 92.43 347.85 98.76 SNHG32-227 lncRNA Karpas-422 (Cell line)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 1799.00 3.16 11.88 100.0 SNHG32-227 lncRNA Karpas-422 (Cell line)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 171.00 0.30 1.13 100.0 SNHG32-227 lncRNA Karpas-422 (Cell line)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 188.00 0.33 1.24 100.0 SNHG32-227 lncRNA Karpas-422 (Cell line)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 415.00 74.77 2.74 100.0 B4GALT1-203 nonsense mediated decay Karpas-422 (Cell line)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 68.00 0.64 0.45 100.0 ENST00000722183 lncRNA Karpas-422 (Cell line)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 887.00 8.40 5.86 72.88 ENST00000722183 lncRNA Karpas-422 (Cell line)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 1864.00 17.66 12.30 100.0 ENST00000722183 lncRNA Karpas-422 (Cell line)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 889.00 38.30 5.87 45.43 THBS3-AS1-228 lncRNA Karpas-422 (Cell line)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 403.00 78.56 2.66 100.0 MIR200CHG-202 lncRNA Karpas-422 (Cell line)
ENST00000732834.1 ENST00000732834.1_1719_1741_+ 1719–1741 21.00 4.09 0.14 100.0 MIR200CHG-202 lncRNA Karpas-422 (Cell line)
ENST00000738116.1 ENST00000738116.1_64_138_+ 64–138 134.00 3.68 0.88 100.0 SNHG16-266 lncRNA Karpas-422 (Cell line)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 397.00 10.89 2.62 100.0 SNHG16-266 lncRNA Karpas-422 (Cell line)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 144.00 3.95 0.95 100.0 SNHG16-266 lncRNA Karpas-422 (Cell line)
ENST00000738116.1 ENST00000738116.1_88_138_+ 88–138 65.00 1.78 0.43 100.0 SNHG16-266 lncRNA Karpas-422 (Cell line)
ENST00000743202.1 ENST00000743202.1_560_577_+ 560–577 813.00 58.87 5.37 100.0 NR2F2-AS1-327 lncRNA Karpas-422 (Cell line)
ENST00000747675.1 ENST00000747675.1_802_853_+ 802–853 374.00 2.91 2.47 37.89 ENST00000747675 lncRNA Karpas-422 (Cell line)
ENST00000747675.1 ENST00000747675.1_817_853_+ 817–853 2661.00 20.70 17.57 100.0 ENST00000747675 lncRNA Karpas-422 (Cell line)
ENST00000747675.1 ENST00000747675.1_800_853_+ 800–853 348.00 2.71 2.30 48.2 ENST00000747675 lncRNA Karpas-422 (Cell line)