ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 28.00 0.11 0.18 35.44 LINC02739-203 lncRNA Karpas-422 (Cell line)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 65.00 0.25 0.43 100.0 LINC02739-203 lncRNA Karpas-422 (Cell line)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 114.00 0.45 0.75 100.0 LINC02739-203 lncRNA Karpas-422 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 4104.00 16.03 27.09 100.0 LINC02739-203 lncRNA Karpas-422 (Cell line)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 14076.00 54.98 92.92 100.0 LINC02739-203 lncRNA Karpas-422 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 51.00 0.20 0.34 64.56 LINC02739-203 lncRNA Karpas-422 (Cell line)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 152.00 1.53 1.00 100.0 SNHG10-212 lncRNA Karpas-422 (Cell line)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 94427.74 88.86 623.34 93.51 SNHG19-202 lncRNA Karpas-422 (Cell line)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 6947.58 6.54 45.86 13.0 SNHG19-202 lncRNA Karpas-422 (Cell line)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 1.86 0.00 0.01 37.29 SNHG19-202 lncRNA Karpas-422 (Cell line)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 2.88 0.00 0.02 72.05 SNHG19-202 lncRNA Karpas-422 (Cell line)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 143.00 5.43 0.94 100.0 RPSA-216 retained intron Karpas-422 (Cell line)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 54.00 64.29 0.36 100.0 MIR99AHG-370 lncRNA Karpas-422 (Cell line)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 14.00 16.67 0.09 100.0 MIR99AHG-370 lncRNA Karpas-422 (Cell line)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 11533.00 96.27 76.13 100.0 HPS4-237 retained intron Karpas-422 (Cell line)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 1753.00 11.08 11.57 100.0 DNAJC5-203 nonsense mediated decay Karpas-422 (Cell line)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 574.00 16.93 3.79 100.0 ENST00000707189 TEC Karpas-422 (Cell line)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 801.00 0.62 5.29 100.0 MIR17HG-214 lncRNA Karpas-422 (Cell line)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 84753.85 65.64 559.48 73.15 MIR17HG-214 lncRNA Karpas-422 (Cell line)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 202.00 0.16 1.33 100.0 MIR17HG-214 lncRNA Karpas-422 (Cell line)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 768.00 0.59 5.07 100.0 MIR17HG-214 lncRNA Karpas-422 (Cell line)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 35066.36 27.16 231.48 31.98 MIR17HG-214 lncRNA Karpas-422 (Cell line)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 2087.00 1.62 13.78 100.0 MIR17HG-214 lncRNA Karpas-422 (Cell line)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 448.00 0.35 2.96 100.0 MIR17HG-214 lncRNA Karpas-422 (Cell line)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 1263.00 0.98 8.34 100.0 MIR17HG-214 lncRNA Karpas-422 (Cell line)