ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362400.1 ENST00000362400.1_1_45_+ 1–45 968.00 0.24 6.39 100.0 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_23_95_+ 23–95 5859.00 1.46 38.68 75.14 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_5_95_+ 5–95 7524.00 1.88 49.67 98.97 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_12_95_+ 12–95 2287.00 0.57 15.10 75.23 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_83_+ 1–83 10529.00 2.63 69.50 61.06 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_20_95_+ 20–95 3766.00 0.94 24.86 61.34 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_58_+ 1–58 2798.00 0.70 18.47 100.0 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_32_+ 1–32 3947.00 0.98 26.05 52.81 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_26_95_+ 26–95 556.00 0.14 3.67 23.56 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_14_32_+ 14–32 571.00 0.14 3.77 100.0 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_15_95_+ 15–95 1578.25 0.39 10.42 55.16 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362415.1 ENST00000362415.1_74_100_+ 74–100 2472.00 15.69 16.32 100.0 Y_RNA.14-201 misc RNA Karpas-422 (Cell line)
ENST00000362441.1 ENST00000362441.1_2_82_+ 2–82 1.00 3.85 0.01 100.0 SNORD115-34-201 snoRNA Karpas-422 (Cell line)
ENST00000362477.1 ENST00000362477.1_70_120_+ 70–120 660.00 4.46 4.36 100.0 RNU5E-1-201 snRNA Karpas-422 (Cell line)
ENST00000362545.1 ENST00000362545.1_1_85_+ 1–85 6715.00 2.63 44.33 38.94 RNA5SP370-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000362607.1 ENST00000362607.1_1_25_+ 1–25 11321.00 69.72 74.73 100.0 SNORA31-201 snoRNA Karpas-422 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_70_+ 1–70 7694.00 3.01 50.79 100.0 RNA5SP389-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_42_+ 1–42 116161.00 45.47 766.80 99.31 RNA5SP389-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_53_+ 1–53 5192.00 2.03 34.27 65.42 RNA5SP389-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_76_+ 1–76 1935.00 0.76 12.77 100.0 RNA5SP389-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000362698.1 ENST00000362698.1_1_78_+ 1–78 114.00 0.14 0.75 100.0 RNU5A-1-201 snRNA Karpas-422 (Cell line)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 5370.98 6.51 35.45 77.05 RNU5A-1-201 snRNA Karpas-422 (Cell line)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 1298.66 1.57 8.57 44.74 RNU5A-1-201 snRNA Karpas-422 (Cell line)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 1692.00 2.05 11.17 49.82 RNU5A-1-201 snRNA Karpas-422 (Cell line)
ENST00000362698.1 ENST00000362698.1_47_116_+ 47–116 2626.00 3.18 17.33 77.33 RNU5A-1-201 snRNA Karpas-422 (Cell line)