ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 3655.00 16.13 24.13 100.0 HSPA9-211 retained intron Karpas-422 (Cell line)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 12955.00 57.19 85.52 96.39 HSPA9-211 retained intron Karpas-422 (Cell line)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 22.00 95.65 0.15 100.0 DNM3OS-205 lncRNA Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 82.00 0.02 0.54 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 10454.00 2.47 69.01 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 97.00 0.02 0.64 43.3 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 17240.00 4.07 113.80 99.32 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 1448.00 0.34 9.56 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 104.00 0.02 0.69 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 501.00 0.12 3.31 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 241503.00 57.04 1594.21 99.8 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 1669.00 0.39 11.02 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 8818.00 2.08 58.21 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 14436.00 3.41 95.29 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 964.00 0.23 6.36 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 21790.00 5.15 143.84 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 183.00 0.04 1.21 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 178.00 0.04 1.18 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 639.00 0.15 4.22 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 4911.00 1.16 32.42 73.48 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 6040.00 1.43 39.87 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 2145.00 0.51 14.16 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 2138.00 0.50 14.11 99.58 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 34111.00 8.06 225.17 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 334.00 0.08 2.20 100.0 GAS5-230 retained intron Karpas-422 (Cell line)