ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 7735.68 2.22 51.06 31.4 U2.3-201 snRNA Karpas-422 (Cell line)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 236.00 0.07 1.56 100.0 U2.6-201 snRNA Karpas-422 (Cell line)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 39.00 0.73 0.26 34.51 ENST00000619323 lncRNA Karpas-422 (Cell line)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 5052.00 94.18 33.35 98.21 ENST00000619323 lncRNA Karpas-422 (Cell line)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 313.00 9.57 2.07 100.0 SCARNA4-202 scaRNA Karpas-422 (Cell line)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 388.00 47.84 2.56 100.0 ENST00000625572 miRNA Karpas-422 (Cell line)
ENST00000628177.1 ENST00000628177.1_1_79_+ 1–79 1549.00 63.02 10.23 100.0 ENST00000628177 snoRNA Karpas-422 (Cell line)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 82955.00 90.05 547.60 100.0 ENST00000630615 snoRNA Karpas-422 (Cell line)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 116.00 50.88 0.77 100.0 DMRT2-209 protein coding Karpas-422 (Cell line)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 14.00 6.14 0.09 100.0 DMRT2-209 protein coding Karpas-422 (Cell line)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 421.00 15.59 2.78 100.0 SNORD98-201 snoRNA Karpas-422 (Cell line)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 1315.00 48.70 8.68 100.0 SNORD98-201 snoRNA Karpas-422 (Cell line)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 28967.80 25.28 191.22 28.43 MIR106AHG-201 lncRNA Karpas-422 (Cell line)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 26.83 0.02 0.18 28.54 MIR106AHG-201 lncRNA Karpas-422 (Cell line)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 25.00 0.02 0.17 100.0 MIR106AHG-201 lncRNA Karpas-422 (Cell line)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 64.75 0.06 0.43 68.88 MIR106AHG-201 lncRNA Karpas-422 (Cell line)
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 5916.00 40.43 39.05 98.85 SNHG14-224 lncRNA Karpas-422 (Cell line)
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 509.00 3.48 3.36 93.74 SNHG14-224 lncRNA Karpas-422 (Cell line)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 128.00 0.87 0.84 100.0 SNHG14-224 lncRNA Karpas-422 (Cell line)
ENST00000640631.2 ENST00000640631.2_5267_5357_+ 5267–5357 174.00 1.19 1.15 89.69 SNHG14-224 lncRNA Karpas-422 (Cell line)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 65.00 0.44 0.43 100.0 SNHG14-224 lncRNA Karpas-422 (Cell line)
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 128.00 0.87 0.84 23.97 SNHG14-224 lncRNA Karpas-422 (Cell line)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 780.00 5.33 5.15 70.97 SNHG14-224 lncRNA Karpas-422 (Cell line)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 2072.00 14.16 13.68 80.59 SNHG14-224 lncRNA Karpas-422 (Cell line)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 12981.30 62.98 85.69 87.4 5S_rRNA.20-201 rRNA pseudogene Karpas-422 (Cell line)