ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 1267.00 3.05 8.36 32.95 NOP56-219 retained intron Karpas-422 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 862.00 2.08 5.69 100.0 NOP56-219 retained intron Karpas-422 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 3908.00 9.42 25.80 100.0 NOP56-219 retained intron Karpas-422 (Cell line)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 26214.00 63.21 173.04 98.1 NOP56-219 retained intron Karpas-422 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 2191.00 3.99 14.46 49.93 RNA5-8SN2-201 rRNA Karpas-422 (Cell line)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 312.75 0.57 2.06 58.9 RNA5-8SN2-201 rRNA Karpas-422 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 3647.00 6.65 24.07 100.0 RNA5-8SN2-201 rRNA Karpas-422 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 1320.00 2.41 8.71 100.0 RNA5-8SN2-201 rRNA Karpas-422 (Cell line)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 522.00 0.95 3.45 100.0 RNA5-8SN2-201 rRNA Karpas-422 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 3210.00 5.85 21.19 59.43 RNA5-8SN2-201 rRNA Karpas-422 (Cell line)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 282.58 0.52 1.87 53.22 RNA5-8SN2-201 rRNA Karpas-422 (Cell line)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 83.00 93.26 0.55 100.0 MIR7974-201 miRNA Karpas-422 (Cell line)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 1249.00 0.36 8.24 100.0 U2.3-201 snRNA Karpas-422 (Cell line)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 7382.45 2.12 48.73 37.23 U2.3-201 snRNA Karpas-422 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 144796.00 41.56 955.83 98.56 U2.3-201 snRNA Karpas-422 (Cell line)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 31.00 0.01 0.20 100.0 U2.3-201 snRNA Karpas-422 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 27739.00 7.96 183.11 68.28 U2.3-201 snRNA Karpas-422 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 7665.00 2.20 50.60 60.73 U2.3-201 snRNA Karpas-422 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 21220.00 6.09 140.08 94.11 U2.3-201 snRNA Karpas-422 (Cell line)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 12213.84 3.51 80.63 61.6 U2.3-201 snRNA Karpas-422 (Cell line)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 540.00 0.15 3.56 100.0 U2.3-201 snRNA Karpas-422 (Cell line)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 2848.00 0.82 18.80 100.0 U2.3-201 snRNA Karpas-422 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_75_+ 1–75 345.00 0.10 2.28 100.0 U2.3-201 snRNA Karpas-422 (Cell line)
ENST00000617785.1 ENST00000617785.1_22_116_+ 22–116 2896.00 0.83 19.12 100.0 U2.3-201 snRNA Karpas-422 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 19799.47 5.68 130.70 63.52 U2.3-201 snRNA Karpas-422 (Cell line)